View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3062_low_12 (Length: 399)

Name: NF3062_low_12
Description: NF3062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3062_low_12
NF3062_low_12
[»] chr2 (5 HSPs)
chr2 (1-238)||(29542569-29542806)
chr2 (241-297)||(2742432-2742488)
chr2 (240-319)||(31330905-31330984)
chr2 (240-319)||(31337626-31337705)
chr2 (253-297)||(2696100-2696144)
[»] chr7 (5 HSPs)
chr7 (240-388)||(48479026-48479174)
chr7 (240-388)||(42784751-42784899)
chr7 (240-297)||(4342395-4342452)
chr7 (240-319)||(3077693-3077772)
chr7 (240-297)||(34455466-34455523)
[»] chr4 (3 HSPs)
chr4 (240-388)||(5600667-5600815)
chr4 (240-297)||(4853652-4853709)
chr4 (240-279)||(6734430-6734469)
[»] chr6 (4 HSPs)
chr6 (240-332)||(5248895-5248987)
chr6 (240-297)||(29933660-29933717)
chr6 (240-297)||(8520596-8520653)
chr6 (253-297)||(33295242-33295286)
[»] chr1 (2 HSPs)
chr1 (253-376)||(14113638-14113760)
chr1 (240-296)||(44192982-44193038)
[»] chr8 (1 HSPs)
chr8 (240-297)||(25637474-25637531)
[»] chr3 (2 HSPs)
chr3 (240-297)||(18112489-18112546)
chr3 (253-297)||(17054270-17054314)
[»] scaffold0643 (1 HSPs)
scaffold0643 (253-297)||(7370-7414)
[»] chr5 (2 HSPs)
chr5 (253-297)||(37367984-37368028)
chr5 (253-297)||(41529545-41529589)


Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-112; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 29542569 - 29542806
Alignment:
Q  1 agcatgatcaagttcaaaacaacctcttgtatggccacaccttcctctagatttggtcagggatcttttacttctcgacgaaggtctggatcaattttca 100  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||| |||||||| ||||||||||||||||||||||| |||||||    
T  29542569 agcatgatcaagttcaaaacaacctcttgtatgaccacacattcctccagatttggtcaaggatctttgacttctcgacgaaggtctggatccattttca 29542668  T
Q  101 tcacggattccaaatccggtactccgaatctttttaggatggagaacattgactcttttcactcttaattattaagatttatttggtgctcataatatga 200  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  29542669 tcacggattccaaatccggtactccgaaactttttaggatggagaacattgactcttttcactcttaattattaagatttatttgatgctcataatatga 29542768  T
Q  201 gaaatattgatgaaattagagagttgaatatattaatg 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  29542769 gaaatattgatgaaattagagagttgaatatattaatg 29542806  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 241 - 297
Target Start/End: Complemental strand, 2742488 - 2742432
Alignment:
Q  241 cttaactgagaacttatgccctctaaacaattcaatttctgctcaaattttccagaa 297  Q
    ||||||||| | ||||||||||||||||||||||||||||  || ||||||||||||    
T  2742488 cttaactgacagcttatgccctctaaacaattcaatttctattctaattttccagaa 2742432  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 240 - 319
Target Start/End: Complemental strand, 31330984 - 31330905
Alignment:
Q  240 gcttaactgagaacttatgccctctaaacaattcaatttctgctcaaattttccagaaacaatacaaacgtgtttacaca 319  Q
    |||||||||| | |||||| ||| |||||||||| |||||   ||||||||||||||| |||  ||||| ||||||||||    
T  31330984 gcttaactgacagcttatgacctttaaacaattccatttcaattcaaattttccagaatcaaagcaaacatgtttacaca 31330905  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 240 - 319
Target Start/End: Complemental strand, 31337705 - 31337626
Alignment:
Q  240 gcttaactgagaacttatgccctctaaacaattcaatttctgctcaaattttccagaaacaatacaaacgtgtttacaca 319  Q
    |||||||||| | |||||| ||| |||||||||| |||||   ||||||||||||||| |||  ||||| ||||||||||    
T  31337705 gcttaactgacagcttatgacctttaaacaattccatttcaattcaaattttccagaatcaaagcaaacatgtttacaca 31337626  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 297
Target Start/End: Complemental strand, 2696144 - 2696100
Alignment:
Q  253 cttatgccctctaaacaattcaatttctgctcaaattttccagaa 297  Q
    |||||| |||||| |||||||||||||  ||||||||||||||||    
T  2696144 cttatgacctctagacaattcaatttcaactcaaattttccagaa 2696100  T

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Target: chr7 (Bit Score: 141; Significance: 8e-74; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 240 - 388
Target Start/End: Original strand, 48479026 - 48479174
Alignment:
Q  240 gcttaactgagaacttatgccctctaaacaattcaatttctgctcaaattttccagaaacaatacaaacgtgtttacacaccttctataccaaatatacg 339  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48479026 gcttaactgacaagttatgccctctaaacaattcaatttctgctcaaattttccagaaacaatacaaacgtgtttacacaccttctataccaaatatacg 48479125  T
Q  340 agattccaacgtgctatactcagtgatcacttataatggcttatgagaa 388  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  48479126 agattccaacgtgctatactcagtgatcacttataatggcttatgagaa 48479174  T

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Target: chr7; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 240 - 388
Target Start/End: Complemental strand, 42784899 - 42784751
Alignment:
Q  240 gcttaactgagaacttatgccctctaaacaattcaatttctgctcaaattttccagaaacaatacaaacgtgtttacacaccttctataccaaatatacg 339  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42784899 gcttaactgacaatttatgccctctaaacaattcaatttctgctcaaattttccagaaacaatacaaacgtgtttacacaccttctataccaaatatacg 42784800  T
Q  340 agattccaacgtgctatactcagtgatcacttataatggcttatgagaa 388  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  42784799 agattccaacgtgctatactcagtgatcacttataatggcttattagaa 42784751  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 240 - 297
Target Start/End: Original strand, 4342395 - 4342452
Alignment:
Q  240 gcttaactgagaacttatgccctctaaacaattcaatttctgctcaaattttccagaa 297  Q
    |||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||    
T  4342395 gcttaactgacaacttataccctctaaacaattcaatttctgttcaaattttccagaa 4342452  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 319
Target Start/End: Complemental strand, 3077772 - 3077693
Alignment:
Q  240 gcttaactgagaacttatgccctctaaacaattcaatttctgctcaaattttccagaaacaatacaaacgtgtttacaca 319  Q
    |||||||| | | ||||| |||||||||| |||||||||||| ||||||||||||||| |||  ||||| ||||||||||    
T  3077772 gcttaactaacagcttataccctctaaaccattcaatttctgttcaaattttccagaagcaaaccaaacatgtttacaca 3077693  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 297
Target Start/End: Complemental strand, 34455523 - 34455466
Alignment:
Q  240 gcttaactgagaacttatgccctctaaacaattcaatttctgctcaaattttccagaa 297  Q
    |||||||||| | |||||| |||||||||||||| |||||   |||||||||||||||    
T  34455523 gcttaactgacagcttatgacctctaaacaattccatttcaattcaaattttccagaa 34455466  T

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Target: chr4 (Bit Score: 141; Significance: 8e-74; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 240 - 388
Target Start/End: Original strand, 5600667 - 5600815
Alignment:
Q  240 gcttaactgagaacttatgccctctaaacaattcaatttctgctcaaattttccagaaacaatacaaacgtgtttacacaccttctataccaaatatacg 339  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5600667 gcttaactgacaagttatgccctctaaacaattcaatttctgctcaaattttccagaaacaatacaaacgtgtttacacaccttctataccaaatatacg 5600766  T
Q  340 agattccaacgtgctatactcagtgatcacttataatggcttatgagaa 388  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5600767 agattccaacgtgctatactcagtgatcacttataatggcttatgagaa 5600815  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 297
Target Start/End: Original strand, 4853652 - 4853709
Alignment:
Q  240 gcttaactgagaacttatgccctctaaacaattcaatttctgctcaaattttccagaa 297  Q
    |||||||||| | ||||||||||||||||||||||||||||  || ||||||||||||    
T  4853652 gcttaactgacagcttatgccctctaaacaattcaatttctattctaattttccagaa 4853709  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 240 - 279
Target Start/End: Complemental strand, 6734469 - 6734430
Alignment:
Q  240 gcttaactgagaacttatgccctctaaacaattcaatttc 279  Q
    |||||||||| |||||||| ||||||||||||||||||||    
T  6734469 gcttaactgacaacttatgacctctaaacaattcaatttc 6734430  T

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Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 240 - 332
Target Start/End: Complemental strand, 5248987 - 5248895
Alignment:
Q  240 gcttaactgagaacttatgccctctaaacaattcaatttctgctcaaattttccagaaacaatacaaacgtgtttacacaccttctataccaa 332  Q
    |||||||||| | |||||||||||||||||||||||||| |  | ||| ||||||||| |||  ||||| ||||||||||||||||| |||||    
T  5248987 gcttaactgacagcttatgccctctaaacaattcaatttttattaaaaatttccagaagcaacccaaacatgtttacacaccttctaaaccaa 5248895  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 240 - 297
Target Start/End: Complemental strand, 29933717 - 29933660
Alignment:
Q  240 gcttaactgagaacttatgccctctaaacaattcaatttctgctcaaattttccagaa 297  Q
    |||||| ||| | ||||||||||||||||||||||||||||  || ||||||||||||    
T  29933717 gcttaattgacagcttatgccctctaaacaattcaatttctattctaattttccagaa 29933660  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 297
Target Start/End: Original strand, 8520596 - 8520653
Alignment:
Q  240 gcttaactgagaacttatgccctctaaacaattcaatttctgctcaaattttccagaa 297  Q
    |||||||||| | |||||| |||||| |||||| ||||||  ||||||||||||||||    
T  8520596 gcttaactgacagcttatgacctctagacaattaaatttcaactcaaattttccagaa 8520653  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 297
Target Start/End: Complemental strand, 33295286 - 33295242
Alignment:
Q  253 cttatgccctctaaacaattcaatttctgctcaaattttccagaa 297  Q
    |||||| |||||| |||||||||||||  ||||||||||||||||    
T  33295286 cttatgacctctagacaattcaatttcaactcaaattttccagaa 33295242  T

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Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 253 - 376
Target Start/End: Complemental strand, 14113760 - 14113638
Alignment:
Q  253 cttatgccctctaaacaattcaatttctgctcaaattttccagaaacaatacaaacgtgtttacacaccttctataccaaatatacgagattccaacgtg 352  Q
    ||||||||||||||||||||||||||||  ||||||||||||||| |||  ||||| ||| |||| | || ||| ||||  | ||||| |||||| ||||    
T  14113760 cttatgccctctaaacaattcaatttctattcaaattttccagaatcaaagcaaacatgtatacatatctccta-accatttctacgaaattccatcgtg 14113662  T
Q  353 ctatactcagtgatcacttataat 376  Q
    |||| |||| | ||||||||||||    
T  14113661 ctatgctcaataatcacttataat 14113638  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 296
Target Start/End: Complemental strand, 44193038 - 44192982
Alignment:
Q  240 gcttaactgagaacttatgccctctaaacaattcaatttctgctcaaattttccaga 296  Q
    |||||||| | |||||||| |||||||||| |||||||||   ||||||||||||||    
T  44193038 gcttaactaacaacttatgacctctaaacagttcaatttcaattcaaattttccaga 44192982  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 240 - 297
Target Start/End: Complemental strand, 25637531 - 25637474
Alignment:
Q  240 gcttaactgagaacttatgccctctaaacaattcaatttctgctcaaattttccagaa 297  Q
    |||||||||| ||||||| ||| ||||||||||||||||||| |||||||||||||||    
T  25637531 gcttaactgacaacttatacccactaaacaattcaatttctgttcaaattttccagaa 25637474  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 297
Target Start/End: Original strand, 18112489 - 18112546
Alignment:
Q  240 gcttaactgagaacttatgccctctaaacaattcaatttctgctcaaattttccagaa 297  Q
    |||||||||| | |||||| |||||||||||||| |||||   |||||||||||||||    
T  18112489 gcttaactgacagcttatgacctctaaacaattccatttcaattcaaattttccagaa 18112546  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 297
Target Start/End: Complemental strand, 17054314 - 17054270
Alignment:
Q  253 cttatgccctctaaacaattcaatttctgctcaaattttccagaa 297  Q
    |||||| |||||| |||||||||||||  ||||||||||||||||    
T  17054314 cttatgacctctagacaattcaatttcaactcaaattttccagaa 17054270  T

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Target: scaffold0643 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0643
Description:

Target: scaffold0643; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 297
Target Start/End: Complemental strand, 7414 - 7370
Alignment:
Q  253 cttatgccctctaaacaattcaatttctgctcaaattttccagaa 297  Q
    |||||| |||||| |||||||||||||  ||||||||||||||||    
T  7414 cttatgacctctagacaattcaatttcaactcaaattttccagaa 7370  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 297
Target Start/End: Complemental strand, 37368028 - 37367984
Alignment:
Q  253 cttatgccctctaaacaattcaatttctgctcaaattttccagaa 297  Q
    |||||| |||||| |||||||||||||  ||||||||||||||||    
T  37368028 cttatgacctctagacaattcaatttcaactcaaattttccagaa 37367984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 297
Target Start/End: Original strand, 41529545 - 41529589
Alignment:
Q  253 cttatgccctctaaacaattcaatttctgctcaaattttccagaa 297  Q
    |||||| |||||| |||||||||||||  ||||||||||||||||    
T  41529545 cttatgacctctagacaattcaatttcaactcaaattttccagaa 41529589  T

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