View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3062_low_15 (Length: 350)
Name: NF3062_low_15
Description: NF3062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3062_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 54172692 - 54172497
Alignment:
| Q |
1 |
attctcctccaattacaagattagaaggcgatgattacaacaaagacaatgataatgatgatgacaaattaggagatttcaataatcttaaaccaaccac |
100 |
Q |
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| T |
54172692 |
attctcctccaattacaagattagaaggcgatgattacaacaaagacaatgataatgatgatgacaaattaggagatttcaataatcttaaaccaaccac |
54172593 |
T |
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| Q |
101 |
aattggtaaacctccaaggcatgcttccagtttgagacatagccttagctccaatagattgaaactggctgcatcagatttggtatgttattcaac |
196 |
Q |
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| T |
54172592 |
aattggtaaacctccaaggcatgcttccagtttgagacatagccttagctccaatagattgaaactggctgcatcagatttggtatgttattcaac |
54172497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 236 - 336
Target Start/End: Complemental strand, 54172456 - 54172356
Alignment:
| Q |
236 |
atagtaattatatattttgacattttggttcatgtcatgttttgtgtcctagttgttcttactttttattattttcttttgttgctttgcttgctataat |
335 |
Q |
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| T |
54172456 |
atagtaattatatattttgacattttggttcatgtcatgttttgtgtcctagttgttcttactttgtattaatttcttttgttgctttgcttgctataat |
54172357 |
T |
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| Q |
336 |
t |
336 |
Q |
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| T |
54172356 |
t |
54172356 |
T |
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