View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3062_low_19 (Length: 323)
Name: NF3062_low_19
Description: NF3062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3062_low_19 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 4872646 - 4872342
Alignment:
| Q |
1 |
atgcaatagccatagattagatagattacgatatatagtagaaccaaagctgatattcttagcagtcatttcagaataaaaatcataggcttgatgtacg |
100 |
Q |
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| T |
4872646 |
atgcaatagccatagattagatagattacgatatatagtagaaccacagctgatattcttagcagtcatttcagaataaaaatcataggcttgatgtacg |
4872547 |
T |
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| Q |
101 |
tacaagtctatctttgcacagcctgcatattatgtacctgtagaacatattcgtgaaggctgttaagatccatctctatctttctgaacaagtggatggc |
200 |
Q |
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| T |
4872546 |
tacaagtctatctttgcacagcctgcgtattatgtacctgtagaacatattcgtgaaggctgttaagatc------------------caagtggatggc |
4872465 |
T |
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| Q |
201 |
tcttttagtttcacctatctcacataagctaccgactagatgatgataagtttacagctcaaccgaaaaccaccctttaggaagatgtaattgtgtaaga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4872464 |
tcttttagtttcacctatctcacataagctaccgactagatgatgataagtttacagctcaaccgaaaaccaccctttaggaagatgtaattgtgtaaga |
4872365 |
T |
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| Q |
301 |
gcattgctttgtaaatgtggcct |
323 |
Q |
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| T |
4872364 |
gcattgctttgtaaatgtggcct |
4872342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 66 - 118
Target Start/End: Complemental strand, 677263 - 677215
Alignment:
| Q |
66 |
tcatttcagaataaaaatcataggcttgatgtacgtacaagtctatctttgca |
118 |
Q |
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| T |
677263 |
tcatttcagaatataaatcataggcttgat----gtacaagtctatctttgca |
677215 |
T |
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