View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3062_low_24 (Length: 290)
Name: NF3062_low_24
Description: NF3062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3062_low_24 |
 | |
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| [»] chr1 (4 HSPs) |
| |
|
| [»] chr2 (28 HSPs) |
| |
|
| [»] scaffold0667 (1 HSPs) |
| |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 16 - 290
Target Start/End: Original strand, 29443121 - 29443395
Alignment:
| Q |
16 |
cactctttcctatgctcgaagaacaatgggggattttgttgagaattcccttcactgggtaatgactcggaaacttgatctgttgcaacctcgtgcaatt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29443121 |
cactctttcctatgctcgaagaacaatgggggattttgttgagaattcccttcactgggtaatgactcggaaacttgatctgttgcaacctcgtgcaatt |
29443220 |
T |
|
| Q |
116 |
gtcgcgtttaacctaacactcgagattttcaatgaggttccttttcctgaaataggtgaagatgttaatagtgagagttttcaaattggtatttcggttc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29443221 |
gtcgcgtttaacctaacactcgagattttcaatgaggttccttttcctgaaataggtgaagatgttaatagtgagagttttcaaattggtatttcggttc |
29443320 |
T |
|
| Q |
216 |
tggaagggtgtctttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagactatggat |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
29443321 |
tggaagggtgtctttgtatgattgtgaattatcaaactgctaaaattgatgtttgggtgatgaaagaatatggat |
29443395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 43 - 290
Target Start/End: Original strand, 29453131 - 29453378
Alignment:
| Q |
43 |
gggggattttgttgagaattcccttcactgggtaatgactcggaaacttgatctgttgcaacctcgtgcaattgtcgcgtttaacctaacactcgagatt |
142 |
Q |
| |
|
||||| ||||||||||||||| ||||||||| |||||||||||||||||| || ||||||| |||||| |||||| |||||||||||||||| ||||||| |
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|
| T |
29453131 |
gggggtttttgttgagaattctcttcactggataatgactcggaaacttggtcagttgcaatctcgtgtaattgttgcgtttaacctaacacacgagatt |
29453230 |
T |
|
| Q |
143 |
ttcaatgaggttccttttcctgaaataggtgaagatgttaatagtgagagttttcaaattggtatttcggttctggaagggtgtctttgtatgattgtga |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||| || ||||| ||||||||||||||||||||||||||| |
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|
| T |
29453231 |
ttcaatgaggttccttttcctgaaataggtgaagaagtgaatagtgagagttttgaaattggtgttgcggttttggaagggtgtctttgtatgattgtga |
29453330 |
T |
|
| Q |
243 |
attatcaaactgttaaaattgatgtttgggtgatgaaagactatggat |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
29453331 |
attatcaaactgttaaaattgatgtttgggtgatgaaagaatatggat |
29453378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 37 - 290
Target Start/End: Complemental strand, 29423586 - 29423333
Alignment:
| Q |
37 |
aacaatgggggattttgttgagaattcccttcactgggtaatgactcggaaacttgatctgttgcaacctcgtgcaattgtcgcgtttaacctaacactc |
136 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||| ||||||| ||||||||||| |||| ||||||||| |||||| |||||||||||||||| |
|
|
| T |
29423586 |
aacaatgggggtttttgttgagaattctcttcactggataatgacggagaaacttgatccgttgaaacctcgtgtaattgttgcgtttaacctaacacat |
29423487 |
T |
|
| Q |
137 |
gagattttcaatgaggttccttttcctgaaataggtgaagatgttaatagtgagagttttcaaattggtatttcggttctggaagggtgtctttgtatga |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||| |||||||| || |||||||||||||||| |||||||||| |
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|
| T |
29423486 |
gagattttcaatgaggttccttttcctgaaattggtgaagaagtgaatagtgagagttttgaaattggtgttgcggttctggaagggtgcctttgtatga |
29423387 |
T |
|
| Q |
237 |
ttgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagactatggat |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
29423386 |
ctgtgaattatcaaactgttaaaattgatgtttggctgatgaaagaatatggat |
29423333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 49 - 290
Target Start/End: Original strand, 29467613 - 29467854
Alignment:
| Q |
49 |
ttttgttgagaattcccttcactgggtaatgactcggaaacttgatctgttgcaacctcgtgcaattgtcgcgtttaacctaacactcgagattttcaat |
148 |
Q |
| |
|
||||||||||||||| ||||| ||| |||||| |||||||||| ||| ||| || || |||| ||||||||||||||| || |||||||||||| |
|
|
| T |
29467613 |
ttttgttgagaattctcttcattggataatgaagaagaaacttgatgggttacaatcttgtttaattatcgcgtttaacctaaagcttgagattttcaat |
29467712 |
T |
|
| Q |
149 |
gaggttccttttcctgaaataggtgaagatgttaatagtgagagttttcaaattggtatttcggttctggaagggtgtctttgtatgattgtgaattatc |
248 |
Q |
| |
|
||||||||| |||||||||||||| | || |||||| |||||||||| |||||| | || ||||| ||| ||||||||||| ||||||||||||||| |
|
|
| T |
29467713 |
gaggttcctcttcctgaaataggttatgaagttaatgttgagagttttaaaattgatgttgcggttttgggagggtgtctttagttgattgtgaattatc |
29467812 |
T |
|
| Q |
249 |
aaactgttaaaattgatgtttgggtgatgaaagactatggat |
290 |
Q |
| |
|
||||| |||||||||||||||| |||||||||| ||||||| |
|
|
| T |
29467813 |
aaactagtaaaattgatgtttggttgatgaaagaatatggat |
29467854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 4e-38; HSPs: 28)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 119 - 290
Target Start/End: Complemental strand, 9364870 - 9364696
Alignment:
| Q |
119 |
gcgtttaacctaacactcgagattttcaatgaggttccttttcctgaaataggtgaagatgttaat---agtgagagttttcaaattggtatttcggttc |
215 |
Q |
| |
|
||||||||| ||||||| |||||||||||||| ||||| |||||||||||||||||| | |||| |||||||||||| |||| | | || ||||| |
|
|
| T |
9364870 |
gcgtttaacttaacactagagattttcaatgaagttccacttcctgaaataggtgaagttaataatgagagtgagagttttgaaatcgatgttgcggttt |
9364771 |
T |
|
| Q |
216 |
tggaagggtgtctttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagactatggat |
290 |
Q |
| |
|
||| |||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||| |
|
|
| T |
9364770 |
tgggagggtgtcttagtatgattgtgaattatcaaactactcaaattgatgtttgggtgatgaaagaatatggat |
9364696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 49 - 288
Target Start/End: Complemental strand, 10336147 - 10335914
Alignment:
| Q |
49 |
ttttgttgagaattcccttcactgggtaatgactcggaaacttgatctgttgcaacctcgtgcaattgtcgcgtttaacctaacactcgagattttcaat |
148 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||| |||||||||| ||| |||||| || ||||| |||||||| ||| |||| |||||||||||| |
|
|
| T |
10336147 |
ttttgttgagaattctcttcactggataatgactccgaaacttgatgggttacaaccttgtttaattgctgcgtttaatctatcacttgagattttcaat |
10336048 |
T |
|
| Q |
149 |
gaggttccttttcctgaaataggtgaagatgttaatagtgagagttttcaaattggtatttcggttctggaagggtgtctttgtatgattgtgaattatc |
248 |
Q |
| |
|
||||||||| ||||||| |||| ||| || |||||||||| ||||| |||| | ||| ||| ||||||||||||| || ||||||||||| |
|
|
| T |
10336047 |
gaggttcctcttcctga------tgaaataattagtaatgagagttttaaaatttctattgctgttttgggagggtgtctttgtttgcctgtgaattatc |
10335954 |
T |
|
| Q |
249 |
aaactgttaaaattgatgtttgggtgatgaaagactatgg |
288 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
10335953 |
aaactactaaaattgatgtttgggtgatgaaagaatatgg |
10335914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 41 - 290
Target Start/End: Complemental strand, 9316342 - 9316081
Alignment:
| Q |
41 |
atgggggattttgttgagaattcccttcactgggtaatgactcggaaacttgatctgttgcaacctcgtgcaattgtcgcgtttaacctaacactcgaga |
140 |
Q |
| |
|
||||||| ||||||| ||||||| ||||||||||||||||||| | || ||| || || ||| || ||||||||||||||||||||||| |||| |
|
|
| T |
9316342 |
atgggggtttttgttcagaattctcttcactgggtaatgactcagcaaagtgaagagtcacacccttgtttcattgtcgcgtttaacctaacacttgaga |
9316243 |
T |
|
| Q |
141 |
ttttcaatgaggttccttttcctg---aaatag---gtgaagatgttaatagtgag------agttttcaaattggtatttcggttctggaagggtgtct |
228 |
Q |
| |
|
||||||||| ||||||| |||||| |||||| || ||| |||||||||||| ||||||||||||| | || | ||| ||| ||||||||| |
|
|
| T |
9316242 |
ttttcaatgtggttcctcttcctgctgaaatagaaagtatagaggttaatagtgagtgtgagagttttcaaattgctgttgctgttttgggagggtgtct |
9316143 |
T |
|
| Q |
229 |
ttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagactatggat |
290 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
9316142 |
ttgtatgattttgaattatcaaactactaaaactgatgtttgggtgatgaaagactatggat |
9316081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 37 - 290
Target Start/End: Complemental strand, 10353439 - 10353177
Alignment:
| Q |
37 |
aacaatgggggattttgttgagaattcc------cttcactgggtaatgactcggaaacttgatctgttgcaacctcgtgcaattgtcgcgtttaaccta |
130 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||| ||| ||||| || | ||||| |||||| | |||| |||||||||||||| |
|
|
| T |
10353439 |
aacaatgggggtttttgttgagaattctagttctcttcactgggtagcgacgaggaaagttcaactgtttcaacctgatttaattctcgcgtttaaccta |
10353340 |
T |
|
| Q |
131 |
acactcgagattttcaatgaggttccttttcc---tgaaataggtgaagatgttaatagtgagagttttcaaattggtatttcggttctggaagggtgtc |
227 |
Q |
| |
|
||||| |||| |||||||||||||||| |||| |||||||| ||||| ||||||||| |||||||| ||||| || || | | | | | |||||||| |
|
|
| T |
10353339 |
acacttgagactttcaatgaggttcctcttcctgatgaaatagaggaagaagttaatagtaagagttttaaaattcgtgttgctgctttaggagggtgtc |
10353240 |
T |
|
| Q |
228 |
tttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagactatggat |
290 |
Q |
| |
|
|||||||||||||| ||||| || | ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10353239 |
tttgtatgattgtggattataaagatactaaaattgatgtttgggtgatgaaagaatatggat |
10353177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 42 - 290
Target Start/End: Complemental strand, 10348104 - 10347853
Alignment:
| Q |
42 |
tgggggattttgttgagaattcccttcactgggtaatgactcggaaacttgatctgttgcaacctcgtgcaattgtcgcgtttaacctaacactcgagat |
141 |
Q |
| |
|
|||||| ||||||||||||||| |||||||| | ||||| |||||||||| ||| || ||| | |||||||||||||||||| ||||| || || |
|
|
| T |
10348104 |
tgggggtttttgttgagaattctattcactggattatgacgaagaaacttgatgggttacatccttctttaattgtcgcgtttaacctcacacttgaaat |
10348005 |
T |
|
| Q |
142 |
tttcaatgaggttccttttcc---tgaaataggtgaagatgttaatagtgagagttttcaaattggtatttcggttctggaagggtgtctttgtatgatt |
238 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||| |||||| ||||||||||| || || | || | ||| ||| ||||||||||||||| | | |
|
|
| T |
10348004 |
tttcaatgaggttcctcttcctgatgaaataggtgaagaagttaatggtgagagttttgaagttcatgttgctgttttgggagggtgtctttgtatcact |
10347905 |
T |
|
| Q |
239 |
gtgaattatcaaactgttaaaattgatgtttgggtgatgaaagactatggat |
290 |
Q |
| |
|
|| ||||| || | |||||||||||||||||| |||||||| ||||||| |
|
|
| T |
10347904 |
gtcgattataaagatactaaaattgatgtttgggtcatgaaagaatatggat |
10347853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 49 - 288
Target Start/End: Complemental strand, 9274821 - 9274591
Alignment:
| Q |
49 |
ttttgttgagaattcccttcactgggtaatgactcggaaacttgatctgttgcaacctcgtgcaattgtcgcgtttaacctaacactcgagattttcaat |
148 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| || || ||||| || || ||| || |||||| ||||||||||||||||| || ||||||||| |
|
|
| T |
9274821 |
ttttgttgagaattctcttcactgggtaatgactagggaaattgatgagtcacacccttgtttaattgttgcgtttaacctaacacttgatattttcaat |
9274722 |
T |
|
| Q |
149 |
gaggttccttttcctgaaataggtgaagatgttaatagtgagagttttcaaattggtatttcggttctggaagggtgtctttgtatgattgtgaattatc |
248 |
Q |
| |
|
| ||||||| |||| |||||| || ||||||||||||||| ||||| | || ||| ||||||||||||||||||||| | ||||||||| |
|
|
| T |
9274721 |
gtggttcctcttcc---------tgaagaagtcaatagtgagagttttgaaattaatgttgttgttttggaagggtgtctttgtatgactttgaattatc |
9274631 |
T |
|
| Q |
249 |
aaactgttaaaattgatgtttgggtgatgaaagactatgg |
288 |
Q |
| |
|
|| | | || |||| ||||||||||||||||| ||||| |
|
|
| T |
9274630 |
gaaatactgaatttgaagtttgggtgatgaaagaatatgg |
9274591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 112 - 288
Target Start/End: Complemental strand, 10372107 - 10371928
Alignment:
| Q |
112 |
aattgtcgcgtttaacctaacactcgagattttcaatgaggttccttttcctga---aataggtgaagatgttaatagtgagagttttcaaattggtatt |
208 |
Q |
| |
|
|||| |||||||||||||| |||| |||| |||||||||||||||| | ||||| | |||||||||| ||||||||| | |||||| ||||| || || |
|
|
| T |
10372107 |
aattctcgcgtttaacctatcacttgagactttcaatgaggttcctctccctgatgaactaggtgaagaagttaatagtaatagttttgaaattcgtgtt |
10372008 |
T |
|
| Q |
209 |
tcggttctggaagggtgtctttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagactatgg |
288 |
Q |
| |
|
| ||| | | ||||||||||||||||| |||| ||||| ||||| ||| ||||| |||||||||||||||| ||||| |
|
|
| T |
10372007 |
gctgttttaggagggtgtctttgtatgactgtggattataaaactactaacgttgatatttgggtgatgaaagaatatgg |
10371928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 41 - 290
Target Start/End: Original strand, 9065408 - 9065667
Alignment:
| Q |
41 |
atgggggattttgttgagaattcccttcactgggtaatgactcggaaacttgatctgttgcaacctcgtgcaattgtcgcgtttaacctaacactcgaga |
140 |
Q |
| |
|
||||||| ||||||||||||||| |||||| | ||||||| |||||| |||| ||| || ||| | |||||| || |||||||| ||||| || | |
|
|
| T |
9065408 |
atgggggtttttgttgagaattctattcacttgataatgacgaagaaactagatcggttacatccttctttaattgttgcatttaacctcacacttgaaa |
9065507 |
T |
|
| Q |
141 |
ttttcaat-gaggttccttttcctg---aaata---ggtgaagatgttaatagt---gagagttttcaaattggtatttcggttctggaagggtgtcttt |
230 |
Q |
| |
|
|||||||| |||||||| |||||| ||||| |||||||| ||||||||| |||||||||||||| | || | ||| ||| ||||||||||| |
|
|
| T |
9065508 |
ttttcaattgaggttccccttcctgctgaaataagaggtgaagaggttaatagtaatgagagttttcaaatgactgttgctgttttgggagggtgtcttt |
9065607 |
T |
|
| Q |
231 |
gtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagactatggat |
290 |
Q |
| |
|
|||||||| |||||||| ||||| ||| ||||||| ||||||||||||||| ||||||| |
|
|
| T |
9065608 |
gtatgattttgaattatgaaactactaatattgatggttgggtgatgaaagaatatggat |
9065667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 112 - 288
Target Start/End: Original strand, 12006005 - 12006190
Alignment:
| Q |
112 |
aattgtcgcgtttaacctaacactcgagattttcaatgaggttccttttcctga------aataggtgaagatgttaatagtga---gagttttcaaatt |
202 |
Q |
| |
|
|||| ||||||||||||||||||| ||| ||||||| ||||||||||||||||| || ||||||||| |||| | || | ||||||| ||||| |
|
|
| T |
12006005 |
aattttcgcgtttaacctaacacttgaggttttcaacgaggttccttttcctgatgaaataagaggtgaagaggttatttgtaatcggagttttgaaatt |
12006104 |
T |
|
| Q |
203 |
ggtatttcggttctggaagggtgtctttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagactatgg |
288 |
Q |
| |
|
| || | | | ||| ||||||||||||| |||||||||||||||||||| ||| |||||||| |||||||||||||| ||||| |
|
|
| T |
12006105 |
aatgttgctgatttgggagggtgtctttgtttgattgtgaattatcaaactactaagattgatgtatgggtgatgaaagaatatgg |
12006190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 112 - 290
Target Start/End: Original strand, 11987374 - 11987561
Alignment:
| Q |
112 |
aattgtcgcgtttaacctaacactcgagattttcaatgaggttccttttcc---tgaaat------aggtgaagatgt---taatagtgagagttttcaa |
199 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||| || |||||||| |||||| || |
|
|
| T |
11987374 |
aattgtcgcatttaacctaacactcgaggttttcaatgaggttccttttcctcatgaaataggaggaggtgaagaggttactaatagtgcaagttttgaa |
11987473 |
T |
|
| Q |
200 |
attggtatttcggttctggaagggtgtctttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagactatggat |
290 |
Q |
| |
|
|||| | || | ||| ||| ||||||||||||| ||| ||||||| |||| || ||| |||||| |||||||||||||||| ||||||| |
|
|
| T |
11987474 |
attgatgttgctgttttgggagggtgtctttgtttgactgtgaatcatcatac---taagattgatatttgggtgatgaaagaatatggat |
11987561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 112 - 288
Target Start/End: Original strand, 12012433 - 12012618
Alignment:
| Q |
112 |
aattgtcgcgtttaacctaacactcgagattttcaatgaggttccttttcc---tgaaat---aggtgaagatgttaatagtga---gagttttcaaatt |
202 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||||||||| ||||| |||||| ||||||||| |||| | || | |||||| ||||| |
|
|
| T |
12012433 |
aattgtcgcgtttaacctaacacttgagcttttcaatgaggttccatttcctgatgaaatatgaggtgaagaggttatttgtaatagtagttttgaaatt |
12012532 |
T |
|
| Q |
203 |
ggtatttcggttctggaagggtgtctttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagactatgg |
288 |
Q |
| |
|
| || | | | ||| ||||||||||||||||||||||||| |||||||| ||| |||||||| | |||||||||||| ||||| |
|
|
| T |
12012533 |
tctgttgctgatttgggagggtgtctttgtatgattgtgaatcatcaaactactaagattgatgtattggtgatgaaagaatatgg |
12012618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 224 - 288
Target Start/End: Original strand, 9284198 - 9284262
Alignment:
| Q |
224 |
tgtctttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagactatgg |
288 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||| |
|
|
| T |
9284198 |
tgtcttagtatgattgtgaattatcaaactactaaaattgacgtttgggtgatgaaagaatatgg |
9284262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 43 - 290
Target Start/End: Complemental strand, 9328908 - 9328667
Alignment:
| Q |
43 |
gggggattttgttgagaattcccttcactgggtaatgactcggaaacttgatctgttgcaacctcgtgcaattgtcgcgtttaacctaacactcgagatt |
142 |
Q |
| |
|
||||| ||| ||||||||||| ||||||||| |||||||| |||||||| | || || ||| | |||||| ||||||||||||||||| || ||| |
|
|
| T |
9328908 |
gggggttttggttgagaattctcttcactggataatgactaagaaacttggtggattacatccttctttaattgttgcgtttaacctaacacttgaaatt |
9328809 |
T |
|
| Q |
143 |
ttcaatgaggttccttttcctgaaataggtgaagatgttaatagtgagagttttcaaattggtatttcggttctggaagggtgtctttgtatgattgtga |
242 |
Q |
| |
|
||||||| ||||||| ||||||| || ||| || || | |||||||| |||||| | || ||| ||| |||||||||||| |||| | ||| |
|
|
| T |
9328808 |
ttcaatgtggttcctcttcctga------tgttgataatagtaataagagttttgaaattgatgttgatgttttgggagggtgtctttgcatgactttga |
9328715 |
T |
|
| Q |
243 |
attatcaaactgttaaaattgatgtttgggtgatgaaagactatggat |
290 |
Q |
| |
|
||||| ||||| | ||||||||||||||||||||||| | ||||||| |
|
|
| T |
9328714 |
attatgaaactactgaaattgatgtttgggtgatgaaacaatatggat |
9328667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 224 - 290
Target Start/End: Complemental strand, 16269223 - 16269157
Alignment:
| Q |
224 |
tgtctttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagactatggat |
290 |
Q |
| |
|
||||||||||| | |||||||||| ||||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
16269223 |
tgtctttgtataactgtgaattatgaaactactaaaattgatgtttgggtgatgaaagagtatggat |
16269157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 221 - 290
Target Start/End: Original strand, 9061146 - 9061215
Alignment:
| Q |
221 |
gggtgtctttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagactatggat |
290 |
Q |
| |
|
||||||||||| ||| |||||||||| || || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
9061146 |
gggtgtctttgcatgtctgtgaattatgaagctactaaaattgatgtttgggtgatgaaagactatggat |
9061215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 223 - 280
Target Start/End: Complemental strand, 9292072 - 9292015
Alignment:
| Q |
223 |
gtgtctttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaa |
280 |
Q |
| |
|
|||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
9292072 |
gtgtctttgtatgactgtgaattatgaaactactaaaattgatgtttgggtgatgaaa |
9292015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 165
Target Start/End: Original strand, 7115480 - 7115579
Alignment:
| Q |
66 |
ttcactgggtaatgactcggaaacttgatctgttgcaacctcgtgcaattgtcgcgtttaacctaacactcgagattttcaatgaggttccttttcctga |
165 |
Q |
| |
|
|||||||| ||||| |||||||||||||| || || ||| || |||||||||||||||||||||||| ||| ||||| |||||||||| ||||||| |
|
|
| T |
7115480 |
ttcactggataatgtctcggaaacttgatgagtcacacccttgtttaattgtcgcgtttaacctaacacttgagcgtttcattgaggttcctcttcctga |
7115579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 41 - 164
Target Start/End: Complemental strand, 9292245 - 9292122
Alignment:
| Q |
41 |
atgggggattttgttgagaattcccttcactgggtaatgactcggaaacttgatctgttgcaacctcgtgcaattgtcgcgtttaacctaacactcgaga |
140 |
Q |
| |
|
||||||| ||||||| ||||||| | ||||||||||||||||||| | ||| | || || ||| || |||||||| |||||||||||||| |||| |
|
|
| T |
9292245 |
atgggggtttttgttcagaattctatccactgggtaatgactcggacaattgttgagtcacacccttgtttcattgtcgcttttaacctaacacttgaga |
9292146 |
T |
|
| Q |
141 |
ttttcaatgaggttccttttcctg |
164 |
Q |
| |
|
|||||||| |||||||||||||| |
|
|
| T |
9292145 |
ctttcaatgtggttccttttcctg |
9292122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 220 - 290
Target Start/End: Original strand, 7115646 - 7115716
Alignment:
| Q |
220 |
agggtgtctttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagactatggat |
290 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||| | ||||||| |
|
|
| T |
7115646 |
agggtgtctttgtatgattgtgaattatagaactactaaaacagatgtttgggtgatgaaacaatatggat |
7115716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 112 - 164
Target Start/End: Original strand, 9284077 - 9284129
Alignment:
| Q |
112 |
aattgtcgcgtttaacctaacactcgagattttcaatgaggttccttttcctg |
164 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||| ||||||||| |||||| |
|
|
| T |
9284077 |
aattgtcgcgtttaacctaacactagaggttttcaaagaggttcctcttcctg |
9284129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 41 - 165
Target Start/End: Complemental strand, 9321290 - 9321166
Alignment:
| Q |
41 |
atgggggattttgttgagaattcccttcactgggtaatgactcggaaacttgatctgttgcaacctcgtgcaattgtcgcgtttaacctaacactcgaga |
140 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||| ||||||| |||||||| | || || ||| | |||||| || |||||||||||||| || | |
|
|
| T |
9321290 |
atgggggtttttgttgagaattctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaa |
9321191 |
T |
|
| Q |
141 |
ttttcaatgaggttccttttcctga |
165 |
Q |
| |
|
||||||||| ||||||| ||||||| |
|
|
| T |
9321190 |
ttttcaatgtggttcctcttcctga |
9321166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 16269325 - 16269277
Alignment:
| Q |
116 |
gtcgcgtttaacctaacactcgagattttcaatgaggttccttttcctg |
164 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||||| |||||| |
|
|
| T |
16269325 |
gtcgcgtttaacctaacacttgagattttcaacgaggttcctcttcctg |
16269277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 221 - 288
Target Start/End: Original strand, 8573510 - 8573577
Alignment:
| Q |
221 |
gggtgtctttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagactatgg |
288 |
Q |
| |
|
||||||||||||||| |||||||||| |||| | ||||||||||||||||||||||||| ||||| |
|
|
| T |
8573510 |
gggtgtctttgtatgtctgtgaattatgaaaccactgaaattgatgtttgggtgatgaaagaatatgg |
8573577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 163
Target Start/End: Original strand, 12018769 - 12018820
Alignment:
| Q |
112 |
aattgtcgcgtttaacctaacactcgagattttcaatgaggttccttttcct |
163 |
Q |
| |
|
||||||||| |||||||| |||||||| |||||||||||||||||| ||||| |
|
|
| T |
12018769 |
aattgtcgcatttaacctcacactcgatattttcaatgaggttcctcttcct |
12018820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 290
Target Start/End: Complemental strand, 7612057 - 7612007
Alignment:
| Q |
240 |
tgaattatcaaactgttaaaattgatgtttgggtgatgaaagactatggat |
290 |
Q |
| |
|
|||||||| ||||| |||| |||||||||||||||||||||| ||||||| |
|
|
| T |
7612057 |
tgaattatgaaactattaagtttgatgtttgggtgatgaaagaatatggat |
7612007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 162
Target Start/End: Original strand, 9061022 - 9061072
Alignment:
| Q |
112 |
aattgtcgcgtttaacctaacactcgagattttcaatgaggttccttttcc |
162 |
Q |
| |
|
||||||||| |||||||| ||||| || |||||||||||||||||| |||| |
|
|
| T |
9061022 |
aattgtcgcatttaacctcacacttgaaattttcaatgaggttcctcttcc |
9061072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 169
Target Start/End: Original strand, 17565967 - 17566024
Alignment:
| Q |
112 |
aattgtcgcgtttaacctaacactcgagattttcaatgaggttccttttcctgaaata |
169 |
Q |
| |
|
|||||||||||||||||| | || |||||||||| ||||||||| ||||||||||| |
|
|
| T |
17565967 |
aattgtcgcgtttaacctcaaacaagagattttcatcgaggttcctcttcctgaaata |
17566024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 157
Target Start/End: Complemental strand, 7612201 - 7612157
Alignment:
| Q |
113 |
attgtcgcgtttaacctaacactcgagattttcaatgaggttcct |
157 |
Q |
| |
|
|||||||| |||||||| |||| ||||||||||||||||||||| |
|
|
| T |
7612201 |
attgtcgcttttaaccttacacaagagattttcaatgaggttcct |
7612157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0667 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0667
Description:
Target: scaffold0667; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 112 - 290
Target Start/End: Complemental strand, 4726 - 4539
Alignment:
| Q |
112 |
aattgtcgcgtttaacctaacactcgagattttcaatgaggttccttttcctga---aataggtgaagatg---ttaat---agtgagagttttcaaatt |
202 |
Q |
| |
|
||||||||| |||||||||||||| || |||||||||||||||||| ||||||| |||||||||||| | ||||| | ||| ||| || ||||| |
|
|
| T |
4726 |
aattgtcgcttttaacctaacacttgaaattttcaatgaggttcctcttcctgacgaaataggtgaagaagaggttaattcaaatgacagtgttgaaatt |
4627 |
T |
|
| Q |
203 |
ggtatttcggttctggaagggtgtctttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagactatggat |
290 |
Q |
| |
|
| | || | | | ||| ||| ||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||| | ||||||| |
|
|
| T |
4626 |
gatgttgctgctttgggaggatgtctttgtatgactgtgaattatgaaactactaaaattgatgtttgggtgatgaaacaatatggat |
4539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 112 - 290
Target Start/End: Complemental strand, 26575110 - 26574929
Alignment:
| Q |
112 |
aattgtcgcgtttaacctaacactcgagattttcaatgaggttccttttcctga---aataggtgaagatgttaatagtgagagttttcaaattggtatt |
208 |
Q |
| |
|
|||| |||| |||||||| |||| |||| |||||| ||||||||| ||||||| |||||| ||| | ||||||||| |||||||| ||||| || || |
|
|
| T |
26575110 |
aattctcgcttttaacctttcacttgagactttcaacgaggttcctcttcctgatgaaataggggaacaagttaatagtaagagttttaaaattcgtgtt |
26575011 |
T |
|
| Q |
209 |
tcggttctggaagggtgtctttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagactatggat |
290 |
Q |
| |
|
| | | | | ||||||||||||||||| |||| ||||| || | ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
26575010 |
gctgatttaggagggtgtctttgtatgactgtggattataaagatactaaaattgatgtttgggtgatgaaagaatatggat |
26574929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 561480 - 561423
Alignment:
| Q |
112 |
aattgtcgcgtttaacctaacactcgagattttcaatgaggttccttttcctgaaata |
169 |
Q |
| |
|
|||||||||||||||||| | | ||||||||||||||||||||| ||||||||||| |
|
|
| T |
561480 |
aattgtcgcgtttaaccttgcccaagagattttcaatgaggttcctcttcctgaaata |
561423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 210 - 288
Target Start/End: Complemental strand, 45243847 - 45243769
Alignment:
| Q |
210 |
cggttctggaagggtgtctttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagactatgg |
288 |
Q |
| |
|
||||| ||| || ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||| |
|
|
| T |
45243847 |
cggttttgggagagtgtctttgtatgattgtgaattatcaaactaatgaaattgatgtttgggtgatgaaagaatatgg |
45243769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 217 - 288
Target Start/End: Complemental strand, 45230576 - 45230502
Alignment:
| Q |
217 |
ggaagggtgtctttgtatgattgtgaattatcaaactgttaaaatt---gatgtttgggtgatgaaagactatgg |
288 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||| |
|
|
| T |
45230576 |
ggaagagtgtctttgtatgattgtgaattatcaaactaataaaattgatgatgtttgggtgatgaaagaatatgg |
45230502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 45238050 - 45238018
Alignment:
| Q |
258 |
aaattgatgtttgggtgatgaaagactatggat |
290 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |
|
|
| T |
45238050 |
aaattgatgtttgggtgatgaaagaatatggat |
45238018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 41 - 164
Target Start/End: Original strand, 41966539 - 41966662
Alignment:
| Q |
41 |
atgggggattttgttgagaattcccttcactgggtaatgactcggaaacttgatctgttgcaacctcgtgcaattgtcgcgtttaacctaacactcgaga |
140 |
Q |
| |
|
||||||| ||||||| | ||||| ||||||||| ||||||| | |||||||| || || ||| || |||||||||||||||||||||||| |||| |
|
|
| T |
41966539 |
atgggggtttttgttcacaattctcttcactggataatgaccaaggaacttgatggattacacccttgtttaattgtcgcgtttaacctaacacttgaga |
41966638 |
T |
|
| Q |
141 |
ttttcaatgaggttccttttcctg |
164 |
Q |
| |
|
||||||| |||||||| |||||| |
|
|
| T |
41966639 |
ttttcaaccaggttcctcttcctg |
41966662 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 170
Target Start/End: Complemental strand, 39427872 - 39427819
Alignment:
| Q |
117 |
tcgcgtttaacctaacactcgagattttcaatgaggttccttttcctgaaatag |
170 |
Q |
| |
|
||||||||||| |||| | ||||||||||||||||||||| |||||||||||| |
|
|
| T |
39427872 |
tcgcgtttaacataactcaagagattttcaatgaggttcctcttcctgaaatag |
39427819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 290
Target Start/End: Complemental strand, 37462626 - 37462557
Alignment:
| Q |
224 |
tgtctttgtatgattgtgaattatcaaa---ctgttaaaattgatgtttgggtgatgaaagactatggat |
290 |
Q |
| |
|
||||||||||||| |||||||||| ||| || |||| |||||||||||||||||||||| ||||||| |
|
|
| T |
37462626 |
tgtctttgtatgactgtgaattataaaaaaactactaaatttgatgtttgggtgatgaaagaatatggat |
37462557 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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