View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3062_low_29 (Length: 260)
Name: NF3062_low_29
Description: NF3062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3062_low_29 |
 | |
|
| [»] chr4 (3 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 15 - 260
Target Start/End: Original strand, 48963031 - 48963279
Alignment:
| Q |
15 |
gaaggcaatggtggggatctgaagcttatgacccaagtcataaacccaggggtatata-----ggtgacgatgcagtcaggtggatccttctccatgaaa |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
48963031 |
gaaggcaatggtggggatctgaagcttatgacccaagtcataaacccatgggtatatacagtcggtgatgatgcagtcaggtggatccttctccatgaaa |
48963130 |
T |
|
| Q |
110 |
tcctgaattggtccgtggaggagcattgcgccgtagtatatcttggctgaggtggcaatgtcagtgatggaggacaaagattcaacacaatcagggaggc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||| |||||| |
|
|
| T |
48963131 |
tcctgaattggtccgtggaggagcattgcgccgtagtatatcttggctgaggtggcgatgtcagtggtggaggacaaagattcaacaccatcaaggaggc |
48963230 |
T |
|
| Q |
210 |
cgacttgtttggaggggaagtcgacggtatgaaggcgaaggaagaggggat |
260 |
Q |
| |
|
| |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
48963231 |
tg--ttgtttggaggggaagtcgatggtatgaaggcgaaggaagaggggat |
48963279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 15 - 260
Target Start/End: Original strand, 48958890 - 48959140
Alignment:
| Q |
15 |
gaaggcaatggtggggatctgaagcttatgacccaagtcataaacccaggggtatat--ag---gtgacgatgcagtcaggtggatccttctccatgaaa |
109 |
Q |
| |
|
|||||| |||||||| || ||||||||||| ||||||||||||||||||||| ||| || | || |||||||||||||||||||||||||||||| |
|
|
| T |
48958890 |
gaaggcgatggtgggaatttgaagcttatgggccaagtcataaacccaggggtttatgcagtcagcgattatgcagtcaggtggatccttctccatgaaa |
48958989 |
T |
|
| Q |
110 |
tcctgaattggtccgtggaggagcattgcgccgtagtatatcttggctgaggtggcaatgtcagtgatggaggacaaagattcaacacaatcagggaggc |
209 |
Q |
| |
|
|| ||||| ||| | ||||||||||||| ||||||||||||||| | |||||| || ||| | | ||||||||| ||||||||| | |||||||||| |
|
|
| T |
48958990 |
tcgtgaataggttcacggaggagcattgccccgtagtatatcttgccggaggtgtcaccgtcggaggtggaggacatagattcaacgccgtcagggaggc |
48959089 |
T |
|
| Q |
210 |
cgacttgtttggaggggaagtcgacggtatgaaggcgaaggaagaggggat |
260 |
Q |
| |
|
| ||||||| |||||| |||| ||| |||||||| ||||||| ||||| |
|
|
| T |
48959090 |
caacttgttgggagggaaagttgacaaggtgaaggcggaggaagaagggat |
48959140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 83 - 138
Target Start/End: Original strand, 48966151 - 48966206
Alignment:
| Q |
83 |
cagtcaggtggatccttctccatgaaatcctgaattggtccgtggaggagcattgc |
138 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||| | |||||||||||||| |
|
|
| T |
48966151 |
cagtcaggtggatctttctccatgaaattctgaattggttcttggaggagcattgc |
48966206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 252
Target Start/End: Original strand, 13449284 - 13449354
Alignment:
| Q |
182 |
gacaaagattcaacacaatcagggaggccgacttgtttggaggggaagtcgacggtatgaaggcgaaggaa |
252 |
Q |
| |
|
|||| |||||||| || ||||||||||||||||||| |||||||||||| ||||| ||||| |||||||| |
|
|
| T |
13449284 |
gacatagattcaataccttcagggaggccgacttgttgggaggggaagtcaacggtgtgaagacgaaggaa |
13449354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 89 - 254
Target Start/End: Original strand, 13441028 - 13441193
Alignment:
| Q |
89 |
ggtggatccttctccatgaaatcctgaattggtccgtggaggagcattgcgccgtagtatatcttggctgaggtggcaatgtcagtgatggaggacaaag |
188 |
Q |
| |
|
|||||||| |||||||||||||||| ||| | ||| ||||||||||||||||| || ||||| ||||| | ||||||| |||| |||| || |
|
|
| T |
13441028 |
ggtggatctttctccatgaaatcctcaatggatccatggaggagcattgcgccacggtggatcttccaagaggtcatagagtcagtggtggaagacatag |
13441127 |
T |
|
| Q |
189 |
attcaacacaatcagggaggccgacttgtttggaggggaagtcgacggtatgaaggcgaaggaaga |
254 |
Q |
| |
|
|||||| | ||||||||| ||||||||| |||||| ||||||||||| || | ||| ||||||| |
|
|
| T |
13441128 |
attcaatgccttcagggaggtcgacttgttgggagggaaagtcgacggtgtggaagcggaggaaga |
13441193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 141
Target Start/End: Original strand, 13462224 - 13462264
Alignment:
| Q |
101 |
tccatgaaatcctgaattggtccgtggaggagcattgcgcc |
141 |
Q |
| |
|
||||||||||||| ||| ||||| ||||||||||||||||| |
|
|
| T |
13462224 |
tccatgaaatcctcaatgggtccatggaggagcattgcgcc |
13462264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 252
Target Start/End: Complemental strand, 12640848 - 12640675
Alignment:
| Q |
79 |
gatgcagtcaggtggatccttctccatgaaatcctgaattggtccgtggaggagcattgcgccgtagtatatcttggctgaggtggcaatgtcagtgatg |
178 |
Q |
| |
|
|||| |||||||| |||||||||||| ||| || ||| ||| | |||||||||||||| || | |||||||||| |||| || || |||| || |
|
|
| T |
12640848 |
gatgtagtcaggttgatccttctccacgaattctctaatgggttcatggaggagcattgcacctttacatatcttggccatggtgtcagggttagtggtg |
12640749 |
T |
|
| Q |
179 |
gaggacaaagattcaacacaatcagggaggccgacttgtttggaggggaagtcgacggtatgaaggcgaaggaa |
252 |
Q |
| |
|
|||||||| |||||||| | || || || ||||||||| |||||||||||||||||| |||||||| ||||| |
|
|
| T |
12640748 |
gaggacaatgattcaacgccgtcgggaagatcgacttgttgggaggggaagtcgacggtgtgaaggcggaggaa |
12640675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 246
Target Start/End: Complemental strand, 12589539 - 12589372
Alignment:
| Q |
79 |
gatgcagtcaggtggatccttctccatgaaatcctgaattggtccgtggaggagcattgcgcc-gtagtatatcttggctgaggtggcaatgtcagtgat |
177 |
Q |
| |
|
|||| |||||||||||||||||| ||| |||||| ||| ||| | |||||||| ||||| | ||| || |||||| |||||||| ||| ||| | |
|
|
| T |
12589539 |
gatgtagtcaggtggatccttctgcatcaaatccccaatgggttcaaggaggagctttgcggctgta-tagatcttgatggaggtggcgtggtcggtggt |
12589441 |
T |
|
| Q |
178 |
ggaggacaaagattcaacacaatcagggaggccgacttgtttggaggggaagtcgacggtatgaaggcg |
246 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||||| ||||||||| || ||| | |||||||| |
|
|
| T |
12589440 |
ggaggacaaagattcgacaccgtcagggaggccgacttgtagggaggggaaatctacgatgtgaaggcg |
12589372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 244
Target Start/End: Original strand, 12541593 - 12541668
Alignment:
| Q |
169 |
gtcagtgatggaggacaaagattcaacacaatcagggaggccgacttgtttggaggggaagtcgacggtatgaagg |
244 |
Q |
| |
|
||||||| ||||||||| |||||||| | | ||||||| ||||||||| ||||||||||||||| || |||||| |
|
|
| T |
12541593 |
gtcagtggtggaggacatagattcaatgcctttagggaggtcgacttgttcggaggggaagtcgacagtgtgaagg |
12541668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University