View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3062_low_3 (Length: 529)
Name: NF3062_low_3
Description: NF3062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3062_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 377; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 6 - 423
Target Start/End: Original strand, 34609176 - 34609597
Alignment:
| Q |
6 |
agaagcataggttgagtagatcagtgtcacgtttttccagatcggttcagcaaccacttcccgttgttgtgcctggagaaggttttagggattctgctca |
105 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34609176 |
agaagcagaggttgagtagatcagtgtcacgtttttccagatcggttcagcaaccacttcacgttgttgtgcctggagaaggttttagggattctgctca |
34609275 |
T |
|
| Q |
106 |
aaagatgaaggcaataaaacttgcaaagaaagcttctaagaagagaaacaaagctgctcgtcgcggagaagctgatagggttatagttaatctcagaccg |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34609276 |
aaagatgaaggcaataaaacttgcaaagaaagcttctaagaagagaaacaaagctgctcgtcgcggagaagctgatagggttatagttaatctcagaccg |
34609375 |
T |
|
| Q |
206 |
aagcacactcttgctggaaagcgccccaagggaaaagctcaccaccgctgatgaaataattggtaattttgttctttggtatcactatgtgtttgtcaga |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
34609376 |
aagcacactcttgctggaaagcgccccaagggaaaagctcaccaccgctgatgaaataattggtaatgttgttctttggtatcacgatgtgtttgtcaga |
34609475 |
T |
|
| Q |
306 |
atcacggtgaac----gtggttttgcagaaactacgcatttagttttattgagctcgagtaattataggtagtgaattgtttgtggcacaaggattttga |
401 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
34609476 |
atcacggcgaaccggagtggttttgcagaaactacgcattttgttttattgagctcgagtaattataggtagtgaattgcttgtggcacaaggattttga |
34609575 |
T |
|
| Q |
402 |
ttagtactgattttaaattaat |
423 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
34609576 |
ttagtactgattttaaattaat |
34609597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 423 - 514
Target Start/End: Original strand, 34609623 - 34609714
Alignment:
| Q |
423 |
tagtttcgttatgctgaaaatgttgagcttgttatatacaatcaagttgtgttttgtttcatttattggggtgattgacaaatcttgttgct |
514 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34609623 |
tagtttcgctatgctgaaaatgttgagcttgttatatacaatcaagttgtgttttgtttcatttattggggtgattgacaaatcttgttgct |
34609714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 156
Target Start/End: Original strand, 32397555 - 32397631
Alignment:
| Q |
80 |
ggagaaggttttagggattctgctcaaaagatgaaggcaataaaacttgcaaagaaagcttctaagaagagaaacaa |
156 |
Q |
| |
|
|||||||| |||||||||||||||||||||| || ||||| |||||||| ||| | | || |||||||||||||| |
|
|
| T |
32397555 |
ggagaaggccttagggattctgctcaaaagatcaaagcaatcaaacttgcgaagggatcatccaagaagagaaacaa |
32397631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 71 - 156
Target Start/End: Original strand, 6130900 - 6130985
Alignment:
| Q |
71 |
gttgtgcctggagaaggttttagggattctgctcaaaagatgaaggcaataaaacttgcaaagaaagcttctaagaagagaaacaa |
156 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||| || ||||| |||||||| ||| | |||| |||||||||||||| |
|
|
| T |
6130900 |
gttgttcctggagaaggccttagggattctgctcaaaagatcaaagcaattaaacttgcgaagggatcttccaagaagagaaacaa |
6130985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 513
Target Start/End: Original strand, 6131580 - 6131641
Alignment:
| Q |
452 |
tgttatatacaatcaagttgtgttttgtttcatttattggggtgattgacaaatcttgttgc |
513 |
Q |
| |
|
|||||||| ||| |||||||| ||| ||| ||| | ||||||||||||||||||||||||| |
|
|
| T |
6131580 |
tgttatatccaagcaagttgtttttcattttattaagtggggtgattgacaaatcttgttgc |
6131641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University