View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3062_low_30 (Length: 256)
Name: NF3062_low_30
Description: NF3062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3062_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 53422767 - 53422525
Alignment:
| Q |
1 |
acttcactgggagaggaagtgtgaatgtgagtagaactgttacaaatgttggtgaagaggatgaaacagtctactccgccatcgttgatgctcctagtgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53422767 |
acttcactgggagaggaagtgtgaatgtgagtagaactgttacaaatgttggtgaagaggatgaaacagtctactccgccatcgttgatgctcctagtgg |
53422668 |
T |
|
| Q |
101 |
agtgaaagtccaattgattccagagaaactccaatttacaaaaagtagcnnnnnnntaagctaccaagttattttctcctacactttaatcccgctgaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53422667 |
ggtgaaagtccaattgattccagagaaactccaatttacaaaaagtagcaaaaaaataagctaccaagttattttctcctacactttaatcccgctgaac |
53422568 |
T |
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| Q |
201 |
gatgatctctttggatccattacatggagaaatgataaatata |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53422567 |
gatgatctctttggatccattacatggagaaatgataaatata |
53422525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 53430730 - 53430491
Alignment:
| Q |
1 |
acttcactgggagaggaagtgtgaatgtgagtagaactgttacaaatgttggtgaagaggatgaaacagtctactccgccatcgttgatgctcctagtgg |
100 |
Q |
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|||||||||||| ||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53430730 |
acttcactgggataggaagtgtgaatgtaagtagaactgttacaaacgtcggtgaagaggatgaaacagtctactccgccatcgttgatgctcctagtgg |
53430631 |
T |
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| Q |
101 |
agtgaaagtccaattgattccagagaaactccaatttacaaaaagtagcnnnnnnntaagctaccaagttattttctcctacactttaatcccgctgaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| || ||||| | |||| || |
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| T |
53430630 |
ggtgaaagtccaattgattccagagaaactccaatttacaaaaagtagcaatagaataagctaccaagttatcttctc---caatttaacctcgctaaag |
53430534 |
T |
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| Q |
201 |
gatgatctctttggatccattacatggagaaatgataaatata |
243 |
Q |
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| T |
53430533 |
gaagatctatttggatccattacatggagaaatgataaatata |
53430491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 48375086 - 48375328
Alignment:
| Q |
1 |
acttcactgggagaggaagtgtgaatgtgagtagaactgttacaaatgttggtgaagaggatgaaacagtctactccgccatcgttgatgctcctagtgg |
100 |
Q |
| |
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|||||||||||| || || ||||||||||||||||||||||||||| ||||| |||||||||||| || |||||| ||||| ||| ||||||||||||| |
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| T |
48375086 |
acttcactgggaaagaaactgtgaatgtgagtagaactgttacaaacgttggcgaagaggatgaagtagcctactctgccatagttaatgctcctagtgg |
48375185 |
T |
|
| Q |
101 |
agtgaaagtccaattgattccagagaaactccaatttacaaaaagtagcnnnnnnntaagctaccaagttattttctcctac-actttaatcccgctgaa |
199 |
Q |
| |
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|||||||| || |||||||||||||||| ||||| |||||||| | ||||||||||| |||||||| |||| ||||||| | || |||| |
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| T |
48375186 |
tgtgaaagttcagctgattccagagaaactacaattcacaaaaagcaataaaaaacaaagctaccaagctattttct-ctactactttaacctcgttgaa |
48375284 |
T |
|
| Q |
200 |
cgatgatctctttggatccattacatggagaaatgataaatata |
243 |
Q |
| |
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|| ||||| |||||||||||||||||||| || | |||||||| |
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| T |
48375285 |
ggaagatctgtttggatccattacatggagtaacggtaaatata |
48375328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 26095097 - 26094938
Alignment:
| Q |
21 |
gtgaatgtgagtagaactgttacaaatgttggtgaagaggatgaaacagtctactccgccatcgttgatgctcctagtggagtgaaagtccaattgattc |
120 |
Q |
| |
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|||||||| ||||||| ||||||||| || ||||||||||| |||| ||||||||| ||| |||| ||||||| ||||| ||||||||||| ||||||| |
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| T |
26095097 |
gtgaatgtcagtagaattgttacaaacgtcggtgaagaggaggaaatagtctactcagccgtcgtcaatgctccgagtggggtgaaagtccagttgattc |
26094998 |
T |
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| Q |
121 |
cagagaaactccaatttacaaaaagtagcnnnnnnntaagctaccaagttattttctcct |
180 |
Q |
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| ||||| || |||||||||||||| ||| |||||| |||||||||||||||| |
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| T |
26094997 |
cggagaagcttcaatttacaaaaagaagcaaaaaacaaagctatcaagttattttctcct |
26094938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 23 - 128
Target Start/End: Complemental strand, 53307548 - 53307443
Alignment:
| Q |
23 |
gaatgtgagtagaactgttacaaatgttggtgaagaggatgaaacagtctactccgccatcgttgatgctcctagtggagtgaaagtccaattgattcca |
122 |
Q |
| |
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||||||||| |||| ||| ||||| || |||||||||||||||| ||||||| |||||||| |||||||| | ||| |||||| |||||||||||||| |
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| T |
53307548 |
gaatgtgagcagaattgtcacaaaagtcggtgaagaggatgaaatagtctacatggccatcgtcgatgctcccaatggggtgaaaatccaattgattcca |
53307449 |
T |
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| Q |
123 |
gagaaa |
128 |
Q |
| |
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|||||| |
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| T |
53307448 |
gagaaa |
53307443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 72 - 243
Target Start/End: Complemental strand, 53319607 - 53319434
Alignment:
| Q |
72 |
tactccgccatcgttgatgctcctagtggagtgaaagtccaattgattccagagaaactccaatttacaaaaagtagcnnnnnnntaagctaccaagtta |
171 |
Q |
| |
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|||||| |||| |||||||||| | || ||||||||| | ||||||||||| ||||| ||||||||| ||| |||| ||||||||||| ||| |
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| T |
53319607 |
tactcctccattattgatgctcccaacggggtgaaagtcgacttgattccagataaacttcaatttacagaaaatagcaaaacactaagctaccaaatta |
53319508 |
T |
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| Q |
172 |
ttttctcct--acactttaatcccgctgaacgatgatctctttggatccattacatggagaaatgataaatata |
243 |
Q |
| |
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||||||||| ||||||||| | | |||| || ||| | |||||||||||||||||||| |||| |||||||| |
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| T |
53319507 |
ttttctcctccacactttaacctcaatgaaggaagatttgtttggatccattacatggagtaatggtaaatata |
53319434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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