View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3062_low_31 (Length: 254)
Name: NF3062_low_31
Description: NF3062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3062_low_31 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 254
Target Start/End: Complemental strand, 14588878 - 14588642
Alignment:
| Q |
18 |
ttatctgcataggtggtggaagcaatccgaccggaaccacaggaaccttgtattggtcagaaatataatctaaccattcaccttcaagttctctagaggt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14588878 |
ttatctgcataggtggtggaagcaatccgaccggaaccacaggaaccttgtattggtcagaaatataatctaaccattcaccttcaagttctctagaggt |
14588779 |
T |
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| Q |
118 |
tctgaaaagaaaaaggtcaacacttgcgtatagtttgtcggcatcagaacgactaaattttcttccagaatcattcttcacagccgactgtattctcata |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
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| T |
14588778 |
tctgaaaagaaaaaggtcaacacttgcgtatagtttgtcggcatcagaacgactaaattttcttccataatcattcttcacagctgactgtattctcata |
14588679 |
T |
|
| Q |
218 |
acctcgtaacgtttgagatgaatggttgtttggaaag |
254 |
Q |
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| T |
14588678 |
acctcgtaacgtttgagatgaatggttgtttggaaag |
14588642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 254
Target Start/End: Complemental strand, 14622536 - 14622300
Alignment:
| Q |
18 |
ttatctgcataggtggtggaagcaatccgaccggaaccacaggaaccttgtattggtcagaaatataatctaaccattcaccttcaagttctctagaggt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14622536 |
ttatctgcataggtggtggaagcaatccgaccggaaccacaggaaccttgtattggtcagaaatataatctaaccattcaccttcaagttctctagaggt |
14622437 |
T |
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| Q |
118 |
tctgaaaagaaaaaggtcaacacttgcgtatagtttgtcggcatcagaacgactaaattttcttccagaatcattcttcacagccgactgtattctcata |
217 |
Q |
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| T |
14622436 |
tctgaaaagaaaaaggtcaacacttgcgtatagtttgtcggcatcagaacgactaaattttcttccataatcattcttcacagttgactgtattctcata |
14622337 |
T |
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| Q |
218 |
acctcgtaacgtttgagatgaatggttgtttggaaag |
254 |
Q |
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| T |
14622336 |
acctcgtaacgtttgagatgaatggttgtttggaaag |
14622300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 12846433 - 12846329
Alignment:
| Q |
18 |
ttatctgcataggtggtggaagcaatccgaccggaaccacaggaaccttgtattggtcagaaatataatctaaccattcaccttcaagttctctagaggt |
117 |
Q |
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|||||||||||| |||||||||||| || || |||| |||||| |||||||||| ||||| |||||||| |||||||||| |||||| ||||| || || |
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| T |
12846433 |
ttatctgcatagatggtggaagcaacccaacaagaacgacaggagccttgtattgttcagagatataatccaaccattcactttcaagctctcttgatgt |
12846334 |
T |
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| Q |
118 |
tctga |
122 |
Q |
| |
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||||| |
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| T |
12846333 |
tctga |
12846329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 18 - 156
Target Start/End: Complemental strand, 29954455 - 29954317
Alignment:
| Q |
18 |
ttatctgcataggtggtggaagcaatccgaccggaaccacaggaaccttgtattggtcagaaatataatctaaccattcaccttcaagttctctagaggt |
117 |
Q |
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|||||||||| | ||||||||||| ||| || |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
29954455 |
ttatctgcatggatggtggaagcattccaactggaaccacaggaactttgtattggtaagaaatataatctaaccattcaccttcaagttctctagaggt |
29954356 |
T |
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| Q |
118 |
tctgaaaagaaaaaggtcaacacttgcgtatagtttgtc |
156 |
Q |
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||| | ||||||||||||| ||||| ||||| |||||| |
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| T |
29954355 |
tcttataagaaaaaggtcacaacttgagtatactttgtc |
29954317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 31 - 143
Target Start/End: Original strand, 51370011 - 51370123
Alignment:
| Q |
31 |
tggtggaagcaatccgaccggaaccacaggaaccttgtattggtcagaaatataatctaaccattcaccttcaagttctctagaggttctgaaaagaaaa |
130 |
Q |
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||||||||| | ||| || |||| |||||||||||||||| ||| ||||| ||||||||||||| |||||||||||||||||||||||| | |||||| |
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| T |
51370011 |
tggtggaagaactccaacaggaagcacaggaaccttgtatcggtgagaaagataatctaaccatggaccttcaagttctctagaggttctaataagaaac |
51370110 |
T |
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| Q |
131 |
aggtcaacacttg |
143 |
Q |
| |
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| |||| |||||| |
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| T |
51370111 |
atgtcagcacttg |
51370123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 132
Target Start/End: Complemental strand, 1361805 - 1361691
Alignment:
| Q |
18 |
ttatctgcataggtggtggaagcaatccgaccggaaccacaggaaccttgtattggtcagaaatataatctaaccattcaccttcaagttctctagaggt |
117 |
Q |
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|||||||||||| |||||||||||| || || ||||| |||||||||||||| || ||||| |||||||| ||||||||||||||||||||||| ||||| |
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| T |
1361805 |
ttatctgcatagatggtggaagcaacccaacaggaacgacaggaaccttgtactgttcagagatataatccaaccattcaccttcaagttctcttgaggt |
1361706 |
T |
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| Q |
118 |
tctgaaaagaaaaag |
132 |
Q |
| |
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||||| ||||||||| |
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| T |
1361705 |
tctgagaagaaaaag |
1361691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 20492590 - 20492472
Alignment:
| Q |
18 |
ttatctgcataggtggtggaagcaatccgaccggaaccacaggaaccttgtattggtcagaaatataatctaaccattcaccttcaagttctctagaggt |
117 |
Q |
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|||||||||| | ||||||||| | ||| || ||||||||||||||||||||| | || ||||||||||||||||||| ||||||||||||||||| || |
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| T |
20492590 |
ttatctgcatggatggtggaagtattccaactggaaccacaggaaccttgtatcgatccgaaatataatctaaccattgaccttcaagttctctagtggc |
20492491 |
T |
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| Q |
118 |
tctgaaaagaaaaaggtca |
136 |
Q |
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||||| ||||| ||||||| |
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| T |
20492490 |
tctgataagaataaggtca |
20492472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 132
Target Start/End: Complemental strand, 1354919 - 1354805
Alignment:
| Q |
18 |
ttatctgcataggtggtggaagcaatccgaccggaaccacaggaaccttgtattggtcagaaatataatctaaccattcaccttcaagttctctagaggt |
117 |
Q |
| |
|
|||||||||||| ||||||| ||| || || ||||| |||||||| ||||| || ||||| |||||||| ||||||||||||||||| ||||| ||||| |
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| T |
1354919 |
ttatctgcatagaaggtggaatcaacccaacaggaacaacaggaacattgtactgttcagagatataatccaaccattcaccttcaagctctctcgaggt |
1354820 |
T |
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| Q |
118 |
tctgaaaagaaaaag |
132 |
Q |
| |
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||||| ||| ||||| |
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| T |
1354819 |
tctgagaagtaaaag |
1354805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 11531769 - 11531651
Alignment:
| Q |
18 |
ttatctgcataggtggtggaagcaatccgaccggaaccacaggaaccttgtattggtcagaaatataatctaaccattcaccttcaagttctctagaggt |
117 |
Q |
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|||||||||| | ||||||||||||||| || ||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||| || || | |
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| T |
11531769 |
ttatctgcatggatggtggaagcaatccaactggaaccacacgaaccttatattggctagaaatataatctaaccattcaccttcaagttctttacagct |
11531670 |
T |
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| Q |
118 |
tctgaaaagaaaaaggtca |
136 |
Q |
| |
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||||| |||||||| |||| |
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| T |
11531669 |
tctgataagaaaaatgtca |
11531651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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