View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3062_low_33 (Length: 251)
Name: NF3062_low_33
Description: NF3062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3062_low_33 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 7 - 240
Target Start/End: Original strand, 38366752 - 38366986
Alignment:
| Q |
7 |
cattcaccatttaatatttctattgattttgcatttcagcaccagaaacattcgatatccatggttgattttgatgttcttcatccccttcctattgatc |
106 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38366752 |
cattcaccgtttaatatttccattgattttgcatttcagcaccagaaacattcgatatccatggttgattttgatgttcttcatccccttcctattgatc |
38366851 |
T |
|
| Q |
107 |
tctacaacccaaattttgtatcaggcactgagctatctcataagccaccattggttgtcccttacttcatccaataatttcatcacatatattcatcatt |
206 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38366852 |
tctacaacccatattttgcatcaggcactgagctatctcataagccaccattggttgtcccttacttcatccaataatttcatcacatatattcatcatt |
38366951 |
T |
|
| Q |
207 |
aa-ttagaaattcacaaccgtgtacccttgttcat |
240 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| |
|
|
| T |
38366952 |
aatttagaaattcacaaccgtgtacccttgttcat |
38366986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 28 - 106
Target Start/End: Original strand, 48718442 - 48718520
Alignment:
| Q |
28 |
attgattttgcatttcagcaccagaaacattcgatatccatggttgattttgatgttcttcatccccttcctattgatc |
106 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||| |||||||||| | | |||||||||||||||| | ||||||| |
|
|
| T |
48718442 |
attgattttgcatttcagcatcagaaacattcgttatacatggttgatctagttgttcttcatcccctttccattgatc |
48718520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 1283917 - 1283849
Alignment:
| Q |
7 |
cattcaccatttaatatttctattgattttgcatttcagcaccagaaacattcgatatccatggttgat |
75 |
Q |
| |
|
||||| ||||||||| |||||||||||||| ||||||| || |||||| || |||||||||||||| |
|
|
| T |
1283917 |
cattcgccatttaatcattctattgattttgtatttcagaactagaaacgtttactatccatggttgat |
1283849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University