View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3062_low_37 (Length: 249)
Name: NF3062_low_37
Description: NF3062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3062_low_37 |
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Alignment Details
Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 39678223 - 39678326
Alignment:
| Q |
1 |
atgtaagtaaagtaaaactaatcctaagagaatatccacaatacttacacagatcctagaaaattaaataagatattctaatatgatcgaaacaatatta |
100 |
Q |
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| T |
39678223 |
atgtaagtaaagtaaaactaatcctaagagaatatccacaatacttacacagatcctagaaaattaaataagatattctaatatgatcgaaataatatta |
39678322 |
T |
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| Q |
101 |
taaa |
104 |
Q |
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|||| |
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| T |
39678323 |
taaa |
39678326 |
T |
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Target: chr8; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 164 - 230
Target Start/End: Original strand, 39678461 - 39678527
Alignment:
| Q |
164 |
caaatagggatttgattcgatttctgcagcacaccgtggttatctgaaggtcctctatacaccttga |
230 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39678461 |
caaatagggatttgattcgatttctgcagcacaccgtggttatctgaaggtcctctatacaccttga |
39678527 |
T |
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