View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3062_low_4 (Length: 501)

Name: NF3062_low_4
Description: NF3062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3062_low_4
NF3062_low_4
[»] chr1 (6 HSPs)
chr1 (16-488)||(34484498-34484977)
chr1 (46-315)||(34498627-34498896)
chr1 (62-389)||(37920885-37921212)
chr1 (99-324)||(34520278-34520503)
chr1 (138-324)||(40802961-40803147)
chr1 (159-324)||(40705381-40705546)
[»] chr4 (1 HSPs)
chr4 (66-420)||(9598531-9598885)
[»] chr7 (1 HSPs)
chr7 (61-420)||(3317131-3317490)
[»] chr5 (2 HSPs)
chr5 (138-389)||(20856145-20856396)
chr5 (108-389)||(20849055-20849335)


Alignment Details
Target: chr1 (Bit Score: 376; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 16 - 488
Target Start/End: Original strand, 34484498 - 34484977
Alignment:
Q  16 aatcatccggcatgttttgcatgtaatttttcatacgaatcttttgctccttctcacgattgtcttgtgtcagctttctcagatgttccctagctttagt 115  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  34484498 aatcatccggcatgttttgcatgtaatttttcattcgaatcttttgctccttctcacgattgtcttgtgtcagctttctcagttgttccctagctttagt 34484597  T
Q  116 aatctgctgcaaaagaaaagtttcttggttcacattctttttatcatctttcatagatgatttctgatacctctcaatcacctgtttgactccatctaga 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  34484598 aatctgctgcaaaagaaaagtttcttggttcacattctttttatcatctttcatatatgatttctgatacctctcaagcacctgtttgactccatctaga 34484697  T
Q  216 tttggccacatctctgttttagaatcaaaaggatcggaaattatagcacatgctggaataccacaaagaacagtgagttccctcaccttcttgatgatac 315  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  34484698 tttggccacacctctgttttagaatcaaaaggatcggaaattatagcacatgctggaataccacaaagaatagtgagttccctcaccttcttgatgatac 34484797  T
Q  316 ccttctttcnnnnnnngtacgtctcctttcttcttgaagcattggagataaaagcaagcttcaccttcttcctaaccatggccttgcaatgtaattgcaa 415  Q
    |||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34484798 ccttctttctttttttgtacgtctcctttcttcttgaagcattggagataaaagcaagcttcaccttcttcctaaccatggccttgcaatgtaattgcaa 34484897  T
Q  416 ggaaataaacaaataataag-------nnnnnnnnnnngttgctttactctgcaaatgccttctggcttttataagagaa 488  Q
    ||||||||||||||||||||                  ||||||||||||||||||||||||||||||||||||||||||    
T  34484898 ggaaataaacaaataataagttttttttttttttttttgttgctttactctgcaaatgccttctggcttttataagagaa 34484977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 46 - 315
Target Start/End: Original strand, 34498627 - 34498896
Alignment:
Q  46 tcatacgaatcttttgctccttctcacgattgtcttgtgtcagctttctcagatgttccctagctttagtaatctgctgcaaaagaaaagtttcttggtt 145  Q
    |||||||||| ||  |||| |||||||||||||||||| |  |||||||||| || ||||||||||||| |||||| |||||||| ||| |||| |||||    
T  34498627 tcatacgaatgttcagctcattctcacgattgtcttgtctttgctttctcagttggtccctagctttagcaatctgttgcaaaaggaaactttcctggtt 34498726  T
Q  146 cacattctttttatcatctttcatagatgatttctgatacctctcaatcacctgtttgactccatctagatttggccacatctctgttttagaatcaaaa 245  Q
    |||||| ||| | |||||||||||| |||| ||||||||||||||||||||||||||| || | |  ||||||||||||| |||||||||||||||||||    
T  34498727 cacattttttctctcatctttcatatatgagttctgatacctctcaatcacctgtttggcttccttcagatttggccacacctctgttttagaatcaaaa 34498826  T
Q  246 ggatcggaaattatagcacatgctggaataccacaaagaacagtgagttccctcaccttcttgatgatac 315  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||| |||||||||||||||||||    
T  34498827 ggatcggaaattatagcacatgctggaataccacaaagaatggtgagttctctcaccttcttgatgatac 34498896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 62 - 389
Target Start/End: Original strand, 37920885 - 37921212
Alignment:
Q  62 ctccttctcacgattgtcttgtgtcagctttctcagatgttccctagctttagtaatctgctgcaaaagaaaagtttcttggttcacattctttttatca 161  Q
    |||||||||||||||||| ||  |  |||||   ||||||||||| |||||  |||||  |||||| |||||  | |||||||||||||||||| | |||    
T  37920885 ctccttctcacgattgtcgtgcttttgcttttgaagatgttccctggctttgctaatcctctgcaatagaaagctctcttggttcacattctttgtttca 37920984  T
Q  162 tctttcatagatgatttctgatacctctcaatcacctgttt-gactccatctagatttggccacatctctgttttagaatcaaaaggatcggaaattata 260  Q
    |||||||  ||||| || ||||||||||||||||| ||||| | |||| |||||||||||||||| |||| ||||||||||||||||||  |||||||||    
T  37920985 tctttcaccgatgaattttgatacctctcaatcacatgtttagcctcc-tctagatttggccacacctctattttagaatcaaaaggattagaaattata 37921083  T
Q  261 gcacatgctggaataccacaaagaacagtgagttccctcaccttcttgatgatacccttctttcnnnnnnngtacgtctcctttcttcttgaagcattgg 360  Q
    ||||| |||||||| || || ||||  |||||||| ||||||||||||||||||||||| ||||        || ||  ||||||||  |||| |||  |    
T  37921084 gcacaagctggaatgccgcatagaatggtgagttcgctcaccttcttgatgatacccttttttcttttcttataggttgcctttcttgctgaatcatcag 37921183  T
Q  361 agataaaagcaagcttcaccttcttccta 389  Q
    ||||||||||||| |||||||||||||||    
T  37921184 agataaaagcaagtttcaccttcttccta 37921212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 99 - 324
Target Start/End: Original strand, 34520278 - 34520503
Alignment:
Q  99 tgttccctagctttagtaatctgctgcaaaagaaaagtttcttggttcacattctttttatcatctttcatagatgatttctgatacctctcaatcacct 198  Q
    |||||||| | |||||||||||| |||||||||||| ||||||||| |||||| ||||| |  | ||| ||| |||  || || ||||||||||||||||    
T  34520278 tgttccctggttttagtaatctgttgcaaaagaaaactttcttggtccacattatttttcttgtgtttgatatatgcattttggtacctctcaatcacct 34520377  T
Q  199 gtttgactccatctagatttggccacatctctgttttagaatcaaaaggatcggaaattatagcacatgctggaataccacaaagaacagtgagttccct 298  Q
    || |  |||| || | ||||||||| | ||||||| |||||||||| |||| ||||||||||||||| ||||||||| ||||||||  |||||| || ||    
T  34520378 gtatagctccctccatatttggccatacctctgttgtagaatcaaacggattggaaattatagcacaggctggaatatcacaaagagtagtgagctctct 34520477  T
Q  299 caccttcttgatgatacccttctttc 324  Q
    ||||||||| ||||||||||||||||    
T  34520478 caccttcttaatgatacccttctttc 34520503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 138 - 324
Target Start/End: Complemental strand, 40803147 - 40802961
Alignment:
Q  138 tcttggttcacattctttttatcatctttcatagatgatttctgatacctctcaatcacctgtttgactccatctagatttggccacatctctgttttag 237  Q
    |||||||||| ||||||  | ||||||||   |||||| || ||||||||||||||||||| |||  |||| ||| ||| |||||| | |||| ||| ||    
T  40803147 tcttggttcaaattcttggtttcatctttagcagatgaattatgatacctctcaatcaccttttttgctccctctcgatctggccagacctctatttgag 40803048  T
Q  238 aatcaaaaggatcggaaattatagcacatgctggaataccacaaagaacagtgagttccctcaccttcttgatgatacccttctttc 324  Q
    ||| ||||||||  ||||| |||||||| || | ||  ||||| |||   | |||||| ||||||||||| ||||||||||||||||    
T  40803047 aattaaaaggatttgaaataatagcacaagcagaaactccacagagagttgagagttcactcaccttctttatgatacccttctttc 40802961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 159 - 324
Target Start/End: Complemental strand, 40705546 - 40705381
Alignment:
Q  159 tcatctttcatagatgatttctgatacctctcaatcacctgtttgactccatctagatttggccacatctctgttttagaatcaaaaggatcggaaatta 258  Q
    |||||||||| |||| | || ||| |||||||||| | ||  ||| |||| ||| |||  ||||| | ||||||   |||||||||||||  ||||||||    
T  40705546 tcatctttcacagataaattttgaaacctctcaattatcttattggctccttctggatgcggccagacctctgtccgagaatcaaaaggactggaaatta 40705447  T
Q  259 tagcacatgctggaataccacaaagaacagtgagttccctcaccttcttgatgatacccttctttc 324  Q
    ||||||| ||||||| | |||||||||  |||||||| || |||||||| | || |||||||||||    
T  40705446 tagcacaagctggaacatcacaaagaatggtgagttcacttaccttctttaagagacccttctttc 40705381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 174; Significance: 2e-93; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 66 - 420
Target Start/End: Original strand, 9598531 - 9598885
Alignment:
Q  66 ttctcacgattgtcttgtgtcagctttctcagatgttccctagctttagtaatctgctgcaaaagaaaagtttcttggttcacattctttttatcatctt 165  Q
    |||||| ||||||| ||| |  || ||||||| || ||||| |||||||||||||  |||||||||||| |||||||||||||||| ||| |  ||||||    
T  9598531 ttctcatgattgtcgtgtctttgcattctcagttgctcccttgctttagtaatcttttgcaaaagaaaactttcttggttcacattttttcttccatctt 9598630  T
Q  166 tcatagatgatttctgatacctctcaatcacctgtttgactccatctagatttggccacatctctgttttagaatcaaaaggatcggaaattatagcaca 265  Q
    ||||| ||||  |||||||||||||||||| ||||||| || | | |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  9598631 tcatatatgagctctgatacctctcaatcatctgtttggcttcctttagatttggccacacctctgttttagaatcaaaaggatcggaaattatagcaca 9598730  T
Q  266 tgctggaataccacaaagaacagtgagttccctcaccttcttgatgatacccttctttcnnnnnnngtacgtctcctttcttcttgaagcattggagata 365  Q
    |||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||| |        || ||| |||||||| ||||  |||||||||||    
T  9598731 tgctggaataccacaaagaatagtgagttctctcaccttcttgatgatacctttcttcctccgcttataggtcgcctttcttgttgagtcattggagata 9598830  T
Q  366 aaagcaagcttcaccttcttcctaaccatggccttgcaatgtaattgcaaggaaa 420  Q
    ||||| || ||||||||||||||| ||||||| |||||||||||| |||||||||    
T  9598831 aaagcgagtttcaccttcttcctagccatggctttgcaatgtaatcgcaaggaaa 9598885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 143; Significance: 7e-75; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 61 - 420
Target Start/End: Original strand, 3317131 - 3317490
Alignment:
Q  61 gctccttctcacgattgtcttgtgtcagctttctcagatgttccctagctttagtaatctgctgcaaaagaaaagtttcttggttcacattctttttatc 160  Q
    |||| |||||| ||||||| ||| |  || ||||||| |||||| ||||||||||||||   |||||||| ||| |||||||||||||||| ||| | ||    
T  3317131 gctcattctcatgattgtcgtgtctttgcattctcagctgttccttagctttagtaatcctttgcaaaaggaaactttcttggttcacattttttctctc 3317230  T
Q  161 atctttcatagatgatttctgatacctctcaatcacctgtttgactccatctagatttggccacatctctgttttagaatcaaaaggatcggaaattata 260  Q
    |||||||||| |||| ||||||||||| ||||||||||||||  || | |  ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  3317231 atctttcatatatgagttctgatacctttcaatcacctgttttgcttccttcagatttggccacacctctgttttagaatcaaaaggatcggaaattata 3317330  T
Q  261 gcacatgctggaataccacaaagaacagtgagttccctcaccttcttgatgatacccttctttcnnnnnnngtacgtctcctttcttcttgaagcattgg 360  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||   ||||| |       ||| |   |||||||| ||||| |||||     
T  3317331 gcacatgctggaataccacaaagaatagtgagttctctcaccttcttgatgatagttttcttcctctttttgtaggaagcctttcttgttgaatcattga 3317430  T
Q  361 agataaaagcaagcttcaccttcttcctaaccatggccttgcaatgtaattgcaaggaaa 420  Q
     |||||| || || |||||||||||||||  |||||| |  |||||||||||||||||||    
T  3317431 tgataaaggcgagtttcaccttcttcctagtcatggcttcacaatgtaattgcaaggaaa 3317490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 1e-48; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 138 - 389
Target Start/End: Original strand, 20856145 - 20856396
Alignment:
Q  138 tcttggttcacattctttttatcatctttcatagatgatttctgatacctctcaatcacctgtttgactccatctagatttggccacatctctgttttag 237  Q
    |||||||||| ||||||| | ||||||||||  ||||| ||||| ||||| |||||||||||| || | || ||||||| |||||||| ||||||||| |    
T  20856145 tcttggttcatattctttgtttcatctttcactgatgagttctggtacctttcaatcacctgtctggccccctctagatctggccacacctctgttttgg 20856244  T
Q  238 aatcaaaaggatcggaaattatagcacatgctggaataccacaaagaacagtgagttccctcaccttcttgatgatacccttctttcnnnnnnngtacgt 337  Q
    ||  |||||||| |||||||||||||||||||||||||||||||||||  |||||||| || |||||||||||||||||||| ||||       ||| ||    
T  20856245 aactaaaaggattggaaattatagcacatgctggaataccacaaagaatggtgagttctctaaccttcttgatgatacccttttttcttttattgtaggt 20856344  T
Q  338 ctcctttcttcttgaagcattggagataaaagcaagcttcaccttcttccta 389  Q
      ||||||||   ||| |||| |||||||||||||| || ||||||||||||    
T  20856345 tgcctttcttgccgaatcattagagataaaagcaagttttaccttcttccta 20856396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 108 - 389
Target Start/End: Original strand, 20849055 - 20849335
Alignment:
Q  108 gctttagtaatctgctgcaaaagaaaagtttcttggttcacattctttttatcatctttcatagatgatttctgatacctctcaatcacctgtttgactc 207  Q
    ||||||||||||  |||||| || ||| | |||||||||||||||||| | ||||||||||  ||||| ||||| |||||||||||||||||| || | |    
T  20849055 gctttagtaatcctctgcaataggaaactctcttggttcacattctttgtttcatctttcactgatgagttctggtacctctcaatcacctgtctggccc 20849154  T
Q  208 catctagatttggccacatctctgttttagaatcaaaaggatcggaaattatagcacatgctggaataccacaaagaacagtgagttccctcaccttctt 307  Q
      ||||||| ||||||||  |||||||| |||  |||||||| |||||||||||||||||||||||||||||||||||  |||||||  || || |||||    
T  20849155 tctctagatctggccacacttctgttttggaactaaaaggattggaaattatagcacatgctggaataccacaaagaatggtgagtt-tctaactttctt 20849253  T
Q  308 gatgatacccttctttcnnnnnnngtacgtctcctttcttcttgaagcattggagataaaagcaagcttcaccttcttccta 389  Q
    |||||||||||| | ||       ||| ||  ||||||||   ||| |||| |||||||||||||| || ||||||||||||    
T  20849254 gatgatacccttttctcttttattgtaggttgcctttcttgccgaatcattagagataaaagcaagttttaccttcttccta 20849335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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