View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3062_low_43 (Length: 240)

Name: NF3062_low_43
Description: NF3062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3062_low_43
NF3062_low_43
[»] chr2 (2 HSPs)
chr2 (31-219)||(29542344-29542532)
chr2 (50-139)||(34341177-34341264)
[»] chr7 (1 HSPs)
chr7 (93-137)||(5747892-5747936)
[»] chr4 (2 HSPs)
chr4 (49-139)||(27059416-27059504)
chr4 (75-140)||(37397385-37397448)
[»] chr5 (1 HSPs)
chr5 (75-139)||(13909410-13909472)


Alignment Details
Target: chr2 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 31 - 219
Target Start/End: Complemental strand, 29542532 - 29542344
Alignment:
Q  31 ttcaaaacagtctgttggtgttcagatccactatataagtgttaatagttctttgttgtacattttacaacaaaagaaccaaacacgccaatttatacaa 130  Q
    ||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  29542532 ttcaaaagagtctattggtgttcagatccaccatataagtgttaatagttctttgttgtacattttacaacaaaagaaccaaacaagcctatttatacaa 29542433  T
Q  131 gtttttgtgtaacattgatgaaggaggaaaccagatgaatattacttcagcagagtggtaagtatgtcataggaccatctagatggtca 219  Q
    ||||||||| | |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  29542432 gtttttgtgcatcattgatgaaggaggaaaccggatgagtattacttcagcagagtggtaagtatgtcataggaccatccagatggtca 29542344  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 50 - 139
Target Start/End: Original strand, 34341177 - 34341264
Alignment:
Q  50 gttcagatccactatataagtgttaatagttctttgttgtacattttacaacaaaagaaccaaacacgccaatttatacaagtttttgtg 139  Q
    ||||||||||||   |||| |||| |||||||||||||||   |||||||||||| ||||||||||| ||||||||||||||||||||||    
T  34341177 gttcagatccaccgaataaatgtttatagttctttgttgtc--ttttacaacaaatgaaccaaacacaccaatttatacaagtttttgtg 34341264  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 137
Target Start/End: Complemental strand, 5747936 - 5747892
Alignment:
Q  93 ttttacaacaaaagaaccaaacacgccaatttatacaagtttttg 137  Q
    |||||||||||| ||||||||||| |||||||||| |||||||||    
T  5747936 ttttacaacaaatgaaccaaacacaccaatttatagaagtttttg 5747892  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 139
Target Start/End: Complemental strand, 27059504 - 27059416
Alignment:
Q  49 tgttcagatccactatataagtgttaatagttctttgttgtacattttacaacaaaagaaccaaacacgccaatttatacaagtttttgtg 139  Q
    |||||||||||||   ||||||||| |  ||| ||||||||   ||||||| |||| ||||||||||| |||||||||| |||||||||||    
T  27059504 tgttcagatccaccggataagtgttcacggttttttgttgtg--ttttacagcaaatgaaccaaacacaccaatttatagaagtttttgtg 27059416  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 140
Target Start/End: Complemental strand, 37397448 - 37397385
Alignment:
Q  75 atagttctttgttgtacattttacaacaaaagaaccaaacacgccaatttatacaagtttttgtgt 140  Q
    |||||| |||||||||  ||||||| |||||||||||| || || |||||||| ||||||||||||    
T  37397448 atagttttttgttgta--ttttacatcaaaagaaccaagcatgctaatttatagaagtttttgtgt 37397385  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 139
Target Start/End: Complemental strand, 13909472 - 13909410
Alignment:
Q  75 atagttctttgttgtacattttacaacaaaagaaccaaacacgccaatttatacaagtttttgtg 139  Q
    |||||||||||||||   |||||||||||| ||||| |||||| | |||||| ||||||||||||    
T  13909472 atagttctttgttgtg--ttttacaacaaatgaaccgaacacgtctatttattcaagtttttgtg 13909410  T

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