View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3062_low_44 (Length: 238)
Name: NF3062_low_44
Description: NF3062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3062_low_44 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 16699781 - 16699561
Alignment:
| Q |
18 |
gatagttcttaaatctgcctgtatgcgaatacttgtacttgttttctttgtgttggtggtggtttaaagaatatgttatatgactgctaggatcttttct |
117 |
Q |
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| T |
16699781 |
gatagttcttaaatctgcctgtatgcgaatacttgtacttgttttctttgtgttggtggtggtttaaagaatatgttatatgactgctaggatcttttct |
16699682 |
T |
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| Q |
118 |
gtttcctatgccgctgctgcgatctgctgttatattgcaatatcagttcaaaatgtcttgataccatttttattctctgacgaatgaagaatggattaat |
217 |
Q |
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| T |
16699681 |
gtttcctatgccactgctgcgacctgctgttatattgcaatatcagttcaaaatgtcttgataccatttttattctctgaggaatgaagaatggattaat |
16699582 |
T |
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| Q |
218 |
caatttgcatattaaattttt |
238 |
Q |
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| T |
16699581 |
caatttccatgttaaattttt |
16699561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 17674017 - 17673797
Alignment:
| Q |
18 |
gatagttcttaaatctgcctgtatgcgaatacttgtacttgttttctttgtgttggtggtggtttaaagaatatgttatatgactgctaggatcttttct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17674017 |
gatagttcttaaatctgcctgtatgcgaatacttgtacttgttttctttgtgttggtggtggtttaaagaatatgttatatgactgctaggatcttttct |
17673918 |
T |
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| Q |
118 |
gtttcctatgccgctgctgcgatctgctgttatattgcaatatcagttcaaaatgtcttgataccatttttattctctgacgaatgaagaatggattaat |
217 |
Q |
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| T |
17673917 |
gtttcctatgccactgctgcgacctgctgttatattgcaatatcagttcaaaatgtcttgataccatttttattctctgaggaatgaagaatggattaat |
17673818 |
T |
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| Q |
218 |
caatttgcatattaaattttt |
238 |
Q |
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| T |
17673817 |
caatttccatgttaaattttt |
17673797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 13717036 - 13716928
Alignment:
| Q |
18 |
gatagttcttaaatctgcctgtatgcgaatacttgtacttgttttctttgtgttggtggtggtttaaagaatatgttatatgactgctaggatcttttct |
117 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||| |||| ||||| |||||||| |
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| T |
13717036 |
gatagttcttaaatctgcctgtatgcgaatactt-tacttgttttctttgtgttggtggtggtttagagattatgttatacgactactaggttcttttct |
13716938 |
T |
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| Q |
118 |
gtttcctatg |
127 |
Q |
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| T |
13716937 |
gtttcatatg |
13716928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 238
Target Start/End: Complemental strand, 13716921 - 13716845
Alignment:
| Q |
162 |
agttcaaaatgtcttgataccatttttattctctgacgaatgaagaatggattaatcaatttgcatattaaattttt |
238 |
Q |
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| T |
13716921 |
agttcaaaatgtctaaataccatttttaatctccaaggaatgacgaatggtttaatcaatttgcatatgaaattttt |
13716845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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