View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3062_low_5 (Length: 463)

Name: NF3062_low_5
Description: NF3062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3062_low_5
NF3062_low_5
[»] chr3 (5 HSPs)
chr3 (8-360)||(3751713-3752065)
chr3 (404-445)||(3752065-3752106)
chr3 (276-315)||(10366644-10366683)
chr3 (276-315)||(24569102-24569141)
chr3 (274-330)||(40462371-40462427)
[»] chr1 (4 HSPs)
chr1 (274-337)||(6160462-6160532)
chr1 (276-315)||(26093468-26093507)
chr1 (276-316)||(4659830-4659870)
chr1 (267-315)||(8896328-8896376)
[»] scaffold0294 (1 HSPs)
scaffold0294 (276-315)||(17109-17148)
[»] chr7 (4 HSPs)
chr7 (276-315)||(5524461-5524500)
chr7 (276-315)||(28103814-28103853)
chr7 (276-315)||(44180286-44180325)
chr7 (274-315)||(16904460-16904501)
[»] chr6 (3 HSPs)
chr6 (276-315)||(31894211-31894250)
chr6 (276-314)||(23142742-23142780)
chr6 (274-315)||(1063602-1063643)
[»] chr5 (3 HSPs)
chr5 (276-315)||(2232073-2232112)
chr5 (276-315)||(40530224-40530263)
chr5 (274-315)||(38508185-38508226)
[»] chr4 (3 HSPs)
chr4 (276-315)||(42517646-42517685)
chr4 (276-315)||(51625157-51625196)
chr4 (274-314)||(462033-462073)
[»] chr2 (3 HSPs)
chr2 (276-315)||(26607968-26608007)
chr2 (250-305)||(45169249-45169304)
chr2 (54-96)||(7485935-7485977)
[»] chr8 (1 HSPs)
chr8 (47-96)||(16599087-16599136)


Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 8 - 360
Target Start/End: Original strand, 3751713 - 3752065
Alignment:
Q  8 tccaagaatattcaaaaggaaaaaagtgaaagactaattggaaactgacttaaaacaattagagagatatgcaaaatatttagaaaattttcttggttat 107  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3751713 tccatgaatattcaaaaggaaaaaagtgaaagactaattggaaactgacttaaaacaattagagagatatgcaaaatatttagaaaattttcttggttat 3751812  T
Q  108 cttgaacttttaagattaattgaacttttaaaactataattaaataagaataaaattttcttgcaaatgcaacaattaaaaaggattgaaggtagtatct 207  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  3751813 cttgaacttttaagattaattgaacttttaaaactacaattaaataagaataaaattttcttgcaaatgcaacaattaaaaaggattgaaagtagtatct 3751912  T
Q  208 ctaatagttccataaacaatacttcagttgactcactgtacgtgtttcatttgagctttgcacaagttttaagaaaatgactaattgtgttgatttcatt 307  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||    
T  3751913 ctaatagttccataaacaatactccagttgactcactatacgtgtttcatttgagctttgcataagttttaaaaaaatgactaattgtgttgattttatt 3752012  T
Q  308 ggtaaaatatttactaaaatactcttattatatcatagttttaaaactcggat 360  Q
     |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3752013 agtaaaatatttactgaaatactcttattatatcatagttttaaaactcggat 3752065  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 404 - 445
Target Start/End: Original strand, 3752065 - 3752106
Alignment:
Q  404 tatagttggatagagcatgcaattgaaccgtgatgaaccagt 445  Q
    ||||||||||||| ||||||||||||||||||| ||||||||    
T  3752065 tatagttggatagggcatgcaattgaaccgtgacgaaccagt 3752106  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 315
Target Start/End: Original strand, 10366644 - 10366683
Alignment:
Q  276 ttaagaaaatgactaattgtgttgatttcattggtaaaat 315  Q
    |||||||||||| ||||||||||||||||| |||||||||    
T  10366644 ttaagaaaatgattaattgtgttgatttcaatggtaaaat 10366683  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 315
Target Start/End: Original strand, 24569102 - 24569141
Alignment:
Q  276 ttaagaaaatgactaattgtgttgatttcattggtaaaat 315  Q
    |||||||||||| ||||||||||||||||| |||||||||    
T  24569102 ttaagaaaatgattaattgtgttgatttcaatggtaaaat 24569141  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 330
Target Start/End: Complemental strand, 40462427 - 40462371
Alignment:
Q  274 ttttaagaaaatgactaattgtgttgatttcattggtaaaatatttactaaaatact 330  Q
    |||||||||||||| ||||||| ||||||||| || ||||||  || ||||||||||    
T  40462427 ttttaagaaaatgattaattgttttgatttcagtgataaaatcatttctaaaatact 40462371  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 337
Target Start/End: Original strand, 6160462 - 6160532
Alignment:
Q  274 ttttaagaaaatgactaattgtgttgatttcattggtaaaa-------tatttactaaaatactcttatta 337  Q
    |||||||||||||| ||||||||||||||||| || |||||       |||||||||||||||||||||||    
T  6160462 ttttaagaaaatgattaattgtgttgatttcaatgataaaattagtattatttactaaaatactcttatta 6160532  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 315
Target Start/End: Complemental strand, 26093507 - 26093468
Alignment:
Q  276 ttaagaaaatgactaattgtgttgatttcattggtaaaat 315  Q
    |||||||||||| ||||||||||||||||| |||||||||    
T  26093507 ttaagaaaatgattaattgtgttgatttcaatggtaaaat 26093468  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 316
Target Start/End: Complemental strand, 4659870 - 4659830
Alignment:
Q  276 ttaagaaaatgactaattgtgttgatttcattggtaaaata 316  Q
    |||||||||||| ||||||||||||||||| || |||||||    
T  4659870 ttaagaaaatgattaattgtgttgatttcaatgctaaaata 4659830  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 315
Target Start/End: Original strand, 8896328 - 8896376
Alignment:
Q  267 gcacaagttttaagaaaatgactaattgtgttgatttcattggtaaaat 315  Q
    |||| ||| |||||||||||| | ||||||||||||||| |||||||||    
T  8896328 gcaccagtcttaagaaaatgattgattgtgttgatttcaatggtaaaat 8896376  T

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Target: scaffold0294 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 315
Target Start/End: Complemental strand, 17148 - 17109
Alignment:
Q  276 ttaagaaaatgactaattgtgttgatttcattggtaaaat 315  Q
    |||||||||||| ||||||||||||||||| |||||||||    
T  17148 ttaagaaaatgattaattgtgttgatttcaatggtaaaat 17109  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 315
Target Start/End: Complemental strand, 5524500 - 5524461
Alignment:
Q  276 ttaagaaaatgactaattgtgttgatttcattggtaaaat 315  Q
    |||||||||||| ||||||||||||||||| |||||||||    
T  5524500 ttaagaaaatgattaattgtgttgatttcaatggtaaaat 5524461  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 315
Target Start/End: Complemental strand, 28103853 - 28103814
Alignment:
Q  276 ttaagaaaatgactaattgtgttgatttcattggtaaaat 315  Q
    |||||||||||| ||||||||||||||||| |||||||||    
T  28103853 ttaagaaaatgattaattgtgttgatttcaatggtaaaat 28103814  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 315
Target Start/End: Complemental strand, 44180325 - 44180286
Alignment:
Q  276 ttaagaaaatgactaattgtgttgatttcattggtaaaat 315  Q
    |||||||||||| ||||||||||||||||| |||||||||    
T  44180325 ttaagaaaatgattaattgtgttgatttcaatggtaaaat 44180286  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 315
Target Start/End: Complemental strand, 16904501 - 16904460
Alignment:
Q  274 ttttaagaaaatgactaattgtgttgatttcattggtaaaat 315  Q
    |||||||||||||| ||||||||||||||||| | |||||||    
T  16904501 ttttaagaaaatgattaattgtgttgatttcaatagtaaaat 16904460  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 315
Target Start/End: Original strand, 31894211 - 31894250
Alignment:
Q  276 ttaagaaaatgactaattgtgttgatttcattggtaaaat 315  Q
    |||||||||||| ||||||||||||||||| |||||||||    
T  31894211 ttaagaaaatgattaattgtgttgatttcaatggtaaaat 31894250  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 314
Target Start/End: Complemental strand, 23142780 - 23142742
Alignment:
Q  276 ttaagaaaatgactaattgtgttgatttcattggtaaaa 314  Q
    |||||||||||| ||||||||||||||||| ||||||||    
T  23142780 ttaagaaaatgattaattgtgttgatttcaatggtaaaa 23142742  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 315
Target Start/End: Original strand, 1063602 - 1063643
Alignment:
Q  274 ttttaagaaaatgactaattgtgttgatttcattggtaaaat 315  Q
    |||||||||||||| ||||||||||||||||| || ||||||    
T  1063602 ttttaagaaaatgattaattgtgttgatttcaatgataaaat 1063643  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 315
Target Start/End: Original strand, 2232073 - 2232112
Alignment:
Q  276 ttaagaaaatgactaattgtgttgatttcattggtaaaat 315  Q
    |||||||||||| ||||||||||||||||| |||||||||    
T  2232073 ttaagaaaatgaataattgtgttgatttcaatggtaaaat 2232112  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 315
Target Start/End: Original strand, 40530224 - 40530263
Alignment:
Q  276 ttaagaaaatgactaattgtgttgatttcattggtaaaat 315  Q
    |||||||||||| ||||||||||||||||| |||||||||    
T  40530224 ttaagaaaatgattaattgtgttgatttcaatggtaaaat 40530263  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 315
Target Start/End: Original strand, 38508185 - 38508226
Alignment:
Q  274 ttttaagaaaatgactaattgtgttgatttcattggtaaaat 315  Q
    |||||||||||||| |||||||||| |||||| |||||||||    
T  38508185 ttttaagaaaatgattaattgtgttaatttcaatggtaaaat 38508226  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 315
Target Start/End: Original strand, 42517646 - 42517685
Alignment:
Q  276 ttaagaaaatgactaattgtgttgatttcattggtaaaat 315  Q
    |||||||||||| ||||||||||||||||| |||||||||    
T  42517646 ttaagaaaatgattaattgtgttgatttcaatggtaaaat 42517685  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 315
Target Start/End: Complemental strand, 51625196 - 51625157
Alignment:
Q  276 ttaagaaaatgactaattgtgttgatttcattggtaaaat 315  Q
    |||||||||||| ||||||||||||||||| |||||||||    
T  51625196 ttaagaaaatgattaattgtgttgatttcaatggtaaaat 51625157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 314
Target Start/End: Complemental strand, 462073 - 462033
Alignment:
Q  274 ttttaagaaaatgactaattgtgttgatttcattggtaaaa 314  Q
    |||||||||||||| ||||||| ||||||||| ||||||||    
T  462073 ttttaagaaaatgattaattgtattgatttcaatggtaaaa 462033  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 315
Target Start/End: Original strand, 26607968 - 26608007
Alignment:
Q  276 ttaagaaaatgactaattgtgttgatttcattggtaaaat 315  Q
    |||||||||||| ||||||||||||||||| |||||||||    
T  26607968 ttaagaaaatgattaattgtgttgatttcaatggtaaaat 26608007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 305
Target Start/End: Complemental strand, 45169304 - 45169249
Alignment:
Q  250 tgtttcatttgagctttgcacaagttttaagaaaatgactaattgtgttgatttca 305  Q
    |||||||||| ||||||||| |  |||||||||||| | |||||||||||||||||    
T  45169304 tgtttcatttaagctttgcatactttttaagaaaataattaattgtgttgatttca 45169249  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 96
Target Start/End: Complemental strand, 7485977 - 7485935
Alignment:
Q  54 gacttaaaacaattagagagatatgcaaaatatttagaaaatt 96  Q
    ||||||||| ||||| ||||||||||| |||||||||||||||    
T  7485977 gacttaaaataattaaagagatatgcacaatatttagaaaatt 7485935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 16599136 - 16599087
Alignment:
Q  47 ggaaactgacttaaaacaattagagagatatgcaaaatatttagaaaatt 96  Q
    ||||| |||||||||| ||||| |||||| |||| |||||||||||||||    
T  16599136 ggaaattgacttaaaataattaaagagatgtgcacaatatttagaaaatt 16599087  T

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