View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3062_low_50 (Length: 235)

Name: NF3062_low_50
Description: NF3062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3062_low_50
NF3062_low_50
[»] chr1 (11 HSPs)
chr1 (1-126)||(42140490-42140612)
chr1 (137-221)||(14924674-14924758)
chr1 (144-218)||(11469732-11469806)
chr1 (137-218)||(11469081-11469162)
chr1 (137-218)||(14925309-14925390)
chr1 (137-218)||(31787478-31787559)
chr1 (137-216)||(7464039-7464118)
chr1 (166-216)||(7463444-7463494)
chr1 (160-218)||(31788243-31788301)
chr1 (151-216)||(11426867-11426932)
chr1 (173-216)||(11427476-11427519)
[»] chr3 (4 HSPs)
chr3 (136-221)||(38337441-38337526)
chr3 (137-221)||(38336944-38337028)
chr3 (137-177)||(42108370-42108410)
chr3 (172-221)||(15450260-15450309)
[»] chr8 (7 HSPs)
chr8 (137-221)||(43924490-43924574)
chr8 (137-221)||(43924982-43925066)
chr8 (136-218)||(12350621-12350703)
chr8 (137-217)||(12349967-12350047)
chr8 (137-218)||(43971278-43971359)
chr8 (159-218)||(39257656-39257715)
chr8 (160-218)||(43972053-43972111)
[»] scaffold0189 (2 HSPs)
scaffold0189 (137-221)||(12184-12268)
scaffold0189 (137-218)||(12826-12907)
[»] chr4 (7 HSPs)
chr4 (142-221)||(10421545-10421624)
chr4 (141-221)||(15481534-15481614)
chr4 (137-218)||(6247438-6247519)
chr4 (136-221)||(15481034-15481119)
chr4 (137-218)||(6246784-6246865)
chr4 (136-208)||(11681251-11681323)
chr4 (136-208)||(11689530-11689602)
[»] chr6 (3 HSPs)
chr6 (144-221)||(27763420-27763497)
chr6 (137-183)||(24125972-24126018)
chr6 (135-216)||(930921-931004)
[»] chr2 (9 HSPs)
chr2 (137-218)||(4975696-4975777)
chr2 (137-218)||(4993604-4993685)
chr2 (136-216)||(41984726-41984806)
chr2 (155-206)||(37545694-37545745)
chr2 (160-218)||(4976472-4976530)
chr2 (160-218)||(4994379-4994437)
chr2 (137-183)||(41985894-41985940)
chr2 (161-218)||(4386175-4386232)
chr2 (155-203)||(1271249-1271297)
[»] chr5 (4 HSPs)
chr5 (137-218)||(4555356-4555437)
chr5 (136-218)||(4554656-4554738)
chr5 (155-192)||(26712381-26712418)
chr5 (155-192)||(26982119-26982156)
[»] scaffold0119 (2 HSPs)
scaffold0119 (161-203)||(36622-36664)
scaffold0119 (155-203)||(29940-29988)
[»] chr7 (2 HSPs)
chr7 (137-179)||(46756270-46756312)
chr7 (137-206)||(27599211-27599280)
[»] scaffold0071 (1 HSPs)
scaffold0071 (172-221)||(11882-11931)


Alignment Details
Target: chr1 (Bit Score: 100; Significance: 1e-49; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 42140612 - 42140490
Alignment:
Q  1 acatcttatgacaatggctgtgtgtggctttagtgatgaaaatcgtactggtggcagcaatcataatatacgatgcattgttttcacactatgttgggta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||| ||||||||||||||||||||||||| ||||    
T  42140612 acatcttatgacaatggctgtgtgtggctttagtgatgaaaatcgtactggtggcagcaatc---atatgcgatgcattgttttcacactatgttcggta 42140516  T
Q  101 aagtattgggtttctgatatacccac 126  Q
    ||||||||||||| ||||||||||||    
T  42140515 aagtattgggtttatgatatacccac 42140490  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 137 - 221
Target Start/End: Original strand, 14924674 - 14924758
Alignment:
Q  137 ggtggcgtttaatttggaaaagggaagttgtttctcaccatgggaaaactaattttgaccgttagattaaatagagaacatattt 221  Q
    ||||| ||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  14924674 ggtggtgtttaatttgggaaagggaagttgtttcccaccatgggaaagctaattttgaccgttaaattaaatagagaacatattt 14924758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 144 - 218
Target Start/End: Complemental strand, 11469806 - 11469732
Alignment:
Q  144 tttaatttggaaaagggaagttgtttctcaccatgggaaaactaattttgaccgttagattaaatagagaacata 218  Q
    |||||||||| ||||||||||||||| ||||||||| |||||||||||||||| |||||| || |||||||||||    
T  11469806 tttaatttgggaaagggaagttgtttttcaccatggaaaaactaattttgaccattagataaagtagagaacata 11469732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 137 - 218
Target Start/End: Original strand, 11469081 - 11469162
Alignment:
Q  137 ggtggcgtttaatttggaaaagggaagttgtttctcaccatgggaaaactaattttgaccgttagattaaatagagaacata 218  Q
    ||||||||||||||| | |||||||||||||||| |||||||||||| |||||||||||| |||||| |  |||||||||||    
T  11469081 ggtggcgtttaatttaggaaagggaagttgtttcccaccatgggaaagctaattttgaccattagataaggtagagaacata 11469162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 137 - 218
Target Start/End: Complemental strand, 14925390 - 14925309
Alignment:
Q  137 ggtggcgtttaatttggaaaagggaagttgtttctcaccatgggaaaactaattttgaccgttagattaaatagagaacata 218  Q
    |||||||||||||||||  |||| |||||||||| |||||||||||| |||||||||||| |||||| || |||||||||||    
T  14925390 ggtggcgtttaatttggggaaggaaagttgtttcccaccatgggaaagctaattttgaccattagataaactagagaacata 14925309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 137 - 218
Target Start/End: Original strand, 31787478 - 31787559
Alignment:
Q  137 ggtggcgtttaatttggaaaagggaagttgtttctcaccatgggaaaactaattttgaccgttagattaaatagagaacata 218  Q
    ||||||||||| | ||| || ||||||||||||| |||||||| ||| |||||||||||| |||||| || |||||||||||    
T  31787478 ggtggcgtttagtatgggaatgggaagttgtttcccaccatggaaaagctaattttgaccattagataaagtagagaacata 31787559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 137 - 216
Target Start/End: Complemental strand, 7464118 - 7464039
Alignment:
Q  137 ggtggcgtttaatttggaaaagggaagttgtttctcaccatgggaaaactaattttgaccgttagattaaatagagaaca 216  Q
    |||||| |||||  ||||||||||||   ||||| ||||||||||||||||||||||||| | ||||||| |||||||||    
T  7464118 ggtggcatttaacatggaaaagggaaagagtttcccaccatgggaaaactaattttgaccatcagattaactagagaaca 7464039  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 7463444 - 7463494
Alignment:
Q  166 gtttctcaccatgggaaaactaattttgaccgttagattaaatagagaaca 216  Q
    ||||| |||||||||||| |||||||||||| |||||||||||| ||||||    
T  7463444 gtttcccaccatgggaaagctaattttgaccattagattaaataaagaaca 7463494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 31788301 - 31788243
Alignment:
Q  160 gaagttgtttctcaccatgggaaaactaattttgaccgttagattaaatagagaacata 218  Q
    ||||||||||| ||||||||||||  ||||||| ||| |||||| ||||||||||||||    
T  31788301 gaagttgtttcccaccatgggaaagttaattttaaccattagataaaatagagaacata 31788243  T

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Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 216
Target Start/End: Original strand, 11426867 - 11426932
Alignment:
Q  151 tggaaaagggaagttgtttctcaccatgggaaaactaattttgaccgttagattaaatagagaaca 216  Q
    ||||||||||||   ||||| |||||||||||| |||||||||||| ||||||||| || ||||||    
T  11426867 tggaaaagggaaagagtttcccaccatgggaaagctaattttgaccattagattaactaaagaaca 11426932  T

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Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 216
Target Start/End: Complemental strand, 11427519 - 11427476
Alignment:
Q  173 accatgggaaaactaattttgaccgttagattaaatagagaaca 216  Q
    |||||||||||||||||||||||| | ||||||| |||||||||    
T  11427519 accatgggaaaactaattttgaccatcagattaactagagaaca 11427476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 4e-34; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 136 - 221
Target Start/End: Complemental strand, 38337526 - 38337441
Alignment:
Q  136 aggtggcgtttaatttggaaaagggaagttgtttctcaccatgggaaaactaattttgaccgttagattaaatagagaacatattt 221  Q
    |||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  38337526 aggtggcgtttaatttgggaaagggaagttgtttcccaccatgggaaagctaattttgaccgttagattaaatagagaacatattt 38337441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 137 - 221
Target Start/End: Original strand, 38336944 - 38337028
Alignment:
Q  137 ggtggcgtttaatttggaaaagggaagttgtttctcaccatgggaaaactaattttgaccgttagattaaatagagaacatattt 221  Q
    |||||| ||||||||||  ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  38336944 ggtggcatttaatttggggaagggaagttgtttcccaccatgggaaagctaattttgaccgttagattaaatagagaacatattt 38337028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 177
Target Start/End: Original strand, 42108370 - 42108410
Alignment:
Q  137 ggtggcgtttaatttggaaaagggaagttgtttctcaccat 177  Q
    ||||||||||||||||| |||||||||||||||| ||||||    
T  42108370 ggtggcgtttaatttgggaaagggaagttgtttcccaccat 42108410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 15450260 - 15450309
Alignment:
Q  172 caccatgggaaaactaattttgaccgttagattaaatagagaacatattt 221  Q
    ||||||||||||  |||| |||||| ||||||||| ||||||||||||||    
T  15450260 caccatgggaaagttaatcttgaccattagattaagtagagaacatattt 15450309  T

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Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 137 - 221
Target Start/End: Original strand, 43924490 - 43924574
Alignment:
Q  137 ggtggcgtttaatttggaaaagggaagttgtttctcaccatgggaaaactaattttgaccgttagattaaatagagaacatattt 221  Q
    |||||| |||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  43924490 ggtggcatttaatttgggaaagggaagttgtttcccaccatgggaaagctaattttgaccgttagattaaatagagaacatattt 43924574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 137 - 221
Target Start/End: Complemental strand, 43925066 - 43924982
Alignment:
Q  137 ggtggcgtttaatttggaaaagggaagttgtttctcaccatgggaaaactaattttgaccgttagattaaatagagaacatattt 221  Q
    ||||||||||||||||| |||||||||||||||| ||||||| ||||  ||||||||||||||||||||||||||||||||||||    
T  43925066 ggtggcgtttaatttgggaaagggaagttgtttcccaccatgagaaagttaattttgaccgttagattaaatagagaacatattt 43924982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 136 - 218
Target Start/End: Complemental strand, 12350703 - 12350621
Alignment:
Q  136 aggtggcgtttaatttggaaaagggaagttgtttctcaccatgggaaaactaattttgaccgttagattaaatagagaacata 218  Q
    |||||||||||||||||| |||||||| ||||||| |||||||||||| |||||||||||| |||||| |  |||||||||||    
T  12350703 aggtggcgtttaatttgggaaagggaaattgtttcccaccatgggaaacctaattttgaccattagataaggtagagaacata 12350621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 137 - 217
Target Start/End: Original strand, 12349967 - 12350047
Alignment:
Q  137 ggtggcgtttaatttggaaaagggaagttgtttctcaccatgggaaaactaattttgaccgttagattaaatagagaacat 217  Q
    ||||||||||||||||| |||||||||||||||| |||||||| |||||||||||| ||| |||||| || || |||||||    
T  12349967 ggtggcgtttaatttgggaaagggaagttgtttcccaccatggaaaaactaattttaaccattagataaagtaaagaacat 12350047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 137 - 218
Target Start/End: Original strand, 43971278 - 43971359
Alignment:
Q  137 ggtggcgtttaatttggaaaagggaagttgtttctcaccatgggaaaactaattttgaccgttagattaaatagagaacata 218  Q
    ||||||||||| | |||||| | ||||||||||| |||||||||||| |||||||||||| ||| || || |||||||||||    
T  43971278 ggtggcgtttagtatggaaatgagaagttgtttcccaccatgggaaagctaattttgaccattaaataaagtagagaacata 43971359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 218
Target Start/End: Original strand, 39257656 - 39257715
Alignment:
Q  159 ggaagttgtttctcaccatgggaaaactaattttgaccgttagattaaatagagaacata 218  Q
    |||||||||||| |||||||||||| |||||||||||| ||| || || |||||||||||    
T  39257656 ggaagttgtttcccaccatgggaaagctaattttgaccattaaataaagtagagaacata 39257715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 43972111 - 43972053
Alignment:
Q  160 gaagttgtttctcaccatgggaaaactaattttgaccgttagattaaatagagaacata 218  Q
    ||||||||||| ||| ||||||||  ||||||| ||| |||||| ||||||||||||||    
T  43972111 gaagttgtttcccactatgggaaagttaattttaaccattagataaaatagagaacata 43972053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 137 - 221
Target Start/End: Original strand, 12184 - 12268
Alignment:
Q  137 ggtggcgtttaatttggaaaagggaagttgtttctcaccatgggaaaactaattttgaccgttagattaaatagagaacatattt 221  Q
    ||||||||||||||||| |||| ||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  12184 ggtggcgtttaatttgggaaagagaagttgtttcccaccatgagaaaattaattttgaccgttagattaaatagagaacatattt 12268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 137 - 218
Target Start/End: Complemental strand, 12907 - 12826
Alignment:
Q  137 ggtggcgtttaatttggaaaagggaagttgtttctcaccatgggaaaactaattttgaccgttagattaaatagagaacata 218  Q
    |||||||||||||||||  ||| ||||||||||| ||||||||||||  ||||||||||| |||||| || |||||||||||    
T  12907 ggtggcgtttaatttggggaagtgaagttgtttcccaccatgggaaagttaattttgaccattagataaactagagaacata 12826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 142 - 221
Target Start/End: Complemental strand, 10421624 - 10421545
Alignment:
Q  142 cgtttaatttggaaaagggaagttgtttctcaccatgggaaaactaattttgaccgttagattaaatagagaacatattt 221  Q
    |||||||||||| |||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  10421624 cgtttaatttgggaaagggaagttgttttccaccatgggaaagctaattttgaccgttagattaaatagagaacatattt 10421545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 141 - 221
Target Start/End: Complemental strand, 15481614 - 15481534
Alignment:
Q  141 gcgtttaatttggaaaagggaagttgtttctcaccatgggaaaactaattttgaccgttagattaaatagagaacatattt 221  Q
    ||||||||||||  |||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  15481614 gcgtttaatttgcgaaagggaagttgtttcccacaatgggaaaactaattttgaccggtagattaaatagagaacatattt 15481534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 137 - 218
Target Start/End: Complemental strand, 6247519 - 6247438
Alignment:
Q  137 ggtggcgtttaatttggaaaagggaagttgtttctcaccatgggaaaactaattttgaccgttagattaaatagagaacata 218  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| | |||||| || |||||||||||    
T  6247519 ggtggcgtttaatttgggaaagggaagttgtttctcatcatgggaaaactaattttgatcattagataaagtagagaacata 6247438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 136 - 221
Target Start/End: Original strand, 15481034 - 15481119
Alignment:
Q  136 aggtggcgtttaatttggaaaagggaagttgtttctcaccatgggaaaactaattttgaccgttagattaaatagagaacatattt 221  Q
    ||||| ||||||||||||  ||||||||||||||| |  ||||||||| |||||||||||||||||||||||||||||||||||||    
T  15481034 aggtgacgtttaatttggggaagggaagttgtttcccgtcatgggaaagctaattttgaccgttagattaaatagagaacatattt 15481119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 137 - 218
Target Start/End: Original strand, 6246784 - 6246865
Alignment:
Q  137 ggtggcgtttaatttggaaaagggaagttgtttctcaccatgggaaaactaattttgaccgttagattaaatagagaacata 218  Q
    ||||||||||||||||| |||||||| ||||||| ||||||||||||  ||||||||||| |||||| |  |||||||||||    
T  6246784 ggtggcgtttaatttgggaaagggaaattgtttcccaccatgggaaagttaattttgaccattagataaggtagagaacata 6246865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 11681323 - 11681251
Alignment:
Q  136 aggtggcgtttaatttggaaaagggaagttgtttctcaccatgggaaaactaattttgaccgttagattaaat 208  Q
    ||||||| |||||||||||||||   |||| |||| |||||||||||| | |||||  ||| |||||||||||    
T  11681323 aggtggcatttaatttggaaaagactagttttttcccaccatgggaaagcaaatttcaaccattagattaaat 11681251  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 11689602 - 11689530
Alignment:
Q  136 aggtggcgtttaatttggaaaagggaagttgtttctcaccatgggaaaactaattttgaccgttagattaaat 208  Q
    ||||||| |||||||||||||||   |||| |||| |||||||||||| | |||||  ||| |||||||||||    
T  11689602 aggtggcatttaatttggaaaagactagttttttcccaccatgggaaagcaaatttcaaccattagattaaat 11689530  T

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Target: chr6 (Bit Score: 62; Significance: 6e-27; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 144 - 221
Target Start/End: Original strand, 27763420 - 27763497
Alignment:
Q  144 tttaatttggaaaagggaagttgtttctcaccatgggaaaactaattttgaccgttagattaaatagagaacatattt 221  Q
    ||||||||||  ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  27763420 tttaatttggggaagggaagttgtttcccaccaagggaaaactaattttgaccgttagattaaatagagaacatattt 27763497  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 24125972 - 24126018
Alignment:
Q  137 ggtggcgtttaatttggaaaagggaagttgtttctcaccatgggaaa 183  Q
    |||||| |||||||||| |||||| ||||||||| ||||||||||||    
T  24125972 ggtggcatttaatttgggaaaggggagttgtttcccaccatgggaaa 24126018  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 216
Target Start/End: Original strand, 930921 - 931004
Alignment:
Q  135 aaggtggcgtttaatttggaaaagggaagttgtttctcaccatgggaaaactaa--ttttgaccgttagattaaatagagaaca 216  Q
    ||||||| ||||||||||| ||||   |||| |||| ||||||||||||| | |  |||||||| ||||||||||||| |||||    
T  930921 aaggtggggtttaatttgggaaagactagttttttcccaccatgggaaaagttagtttttgaccattagattaaatagggaaca 931004  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 218
Target Start/End: Original strand, 4975696 - 4975777
Alignment:
Q  137 ggtggcgtttaatttggaaaagggaagttgtttctcaccatgggaaaactaattttgaccgttagattaaatagagaacata 218  Q
    ||||||||||| | ||| || ||||||||||||| |||||||| ||| |||||||||||| ||| || || |||||||||||    
T  4975696 ggtggcgtttagtatgggaatgggaagttgtttcccaccatggaaaagctaattttgaccattaaataaagtagagaacata 4975777  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 218
Target Start/End: Original strand, 4993604 - 4993685
Alignment:
Q  137 ggtggcgtttaatttggaaaagggaagttgtttctcaccatgggaaaactaattttgaccgttagattaaatagagaacata 218  Q
    ||||||||||| | ||| || ||||||||||||  |||||||| ||| |||||||||||| ||| || || |||||||||||    
T  4993604 ggtggcgtttagtatgggaatgggaagttgttttccaccatggaaaagctaattttgaccattaaataaagtagagaacata 4993685  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 216
Target Start/End: Original strand, 41984726 - 41984806
Alignment:
Q  136 aggtggcgtttaatttggaaaagggaagttgtttctcaccatgggaaaactaattttgaccgttagattaaatagagaaca 216  Q
    ||||||| |||||||||| |||||  |||| ||||||||||||||||| ||| || ||||| ||||||  |||| ||||||    
T  41984726 aggtggcatttaatttgggaaaggctagttttttctcaccatgggaaagctatttctgaccattagatctaataaagaaca 41984806  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 206
Target Start/End: Original strand, 37545694 - 37545745
Alignment:
Q  155 aaagggaagttgtttctcaccatgggaaaactaattttgaccgttagattaa 206  Q
    |||||||||||||||| ||||||||||||  ||| ||||||| |||||||||    
T  37545694 aaagggaagttgtttcccaccatgggaaagttaaatttgaccattagattaa 37545745  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 4976530 - 4976472
Alignment:
Q  160 gaagttgtttctcaccatgggaaaactaattttgaccgttagattaaatagagaacata 218  Q
    ||||||||||| ||| ||||||||  ||||||| ||| |||||| ||||||||||||||    
T  4976530 gaagttgtttcccactatgggaaagttaattttaaccattagataaaatagagaacata 4976472  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 4994437 - 4994379
Alignment:
Q  160 gaagttgtttctcaccatgggaaaactaattttgaccgttagattaaatagagaacata 218  Q
    ||||||||||| ||| ||||||||  ||||||| ||| |||||| ||||||||||||||    
T  4994437 gaagttgtttcccactatgggaaagttaattttaaccattagataaaatagagaacata 4994379  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 41985940 - 41985894
Alignment:
Q  137 ggtggcgtttaatttggaaaagggaagttgtttctcaccatgggaaa 183  Q
    ||||||||||||||||| |||||||||||||||  ||||||| ||||    
T  41985940 ggtggcgtttaatttgggaaagggaagttgttttccaccatgagaaa 41985894  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 218
Target Start/End: Complemental strand, 4386232 - 4386175
Alignment:
Q  161 aagttgtttctcaccatgggaaaactaattttgaccgttagattaaatagagaacata 218  Q
    |||||||||| |||||||||||| |||||||  || ||||||||||||| ||| ||||    
T  4386232 aagttgtttcccaccatgggaaagctaatttaaacggttagattaaatatagagcata 4386175  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 1271249 - 1271297
Alignment:
Q  155 aaagggaagttgtttctcaccatgggaaaactaattttgaccgttagat 203  Q
    ||||| |||||||||  ||| ||||||||||||||||| ||||||||||    
T  1271249 aaaggaaagttgttttccactatgggaaaactaattttaaccgttagat 1271297  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 218
Target Start/End: Complemental strand, 4555437 - 4555356
Alignment:
Q  137 ggtggcgtttaatttggaaaagggaagttgtttctcaccatgggaaaactaattttgaccgttagattaaatagagaacata 218  Q
    |||||| |||| | ||| ||||||||||||||||  ||||||||||| |||||||||| |||| ||| || | |||||||||    
T  4555437 ggtggcatttagtatgggaaagggaagttgtttcctaccatgggaaagctaattttgaacgttggataaagtggagaacata 4555356  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 218
Target Start/End: Original strand, 4554656 - 4554738
Alignment:
Q  136 aggtggcgtttaatttggaaaagggaagttgtttctcaccatgggaaaactaattttgaccgttagattaaatagagaacata 218  Q
    |||||| ||||| | ||| ||||| || ||||||  ||||||| |||| |||||||||||| |||||| || |||||||||||    
T  4554656 aggtggggtttagtatgggaaaggaaaattgttttccaccatgagaaagctaattttgaccattagataaagtagagaacata 4554738  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 26712418 - 26712381
Alignment:
Q  155 aaagggaagttgtttctcaccatgggaaaactaatttt 192  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  26712418 aaagggaagttgtttcccaccatgggaaagctaatttt 26712381  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 26982156 - 26982119
Alignment:
Q  155 aaagggaagttgtttctcaccatgggaaaactaatttt 192  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  26982156 aaagggaagttgtttcccaccatgggaaagctaatttt 26982119  T

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Target: scaffold0119 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 203
Target Start/End: Complemental strand, 36664 - 36622
Alignment:
Q  161 aagttgtttctcaccatgggaaaactaattttgaccgttagat 203  Q
    |||||||||| ||| |||||||||||||||||||| |||||||    
T  36664 aagttgtttcccactatgggaaaactaattttgactgttagat 36622  T

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Target: scaffold0119; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 29988 - 29940
Alignment:
Q  155 aaagggaagttgtttctcaccatgggaaaactaattttgaccgttagat 203  Q
    ||||| |||||||||  ||| ||||||||||||||||| ||||||||||    
T  29988 aaaggaaagttgttttccactatgggaaaactaattttaaccgttagat 29940  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 179
Target Start/End: Original strand, 46756270 - 46756312
Alignment:
Q  137 ggtggcgtttaatttggaaaagggaagttgtttctcaccatgg 179  Q
    ||||||||||||||||| |||||||||||||||  ||||||||    
T  46756270 ggtggcgtttaatttgggaaagggaagttgttttccaccatgg 46756312  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 206
Target Start/End: Original strand, 27599211 - 27599280
Alignment:
Q  137 ggtggcgtttaatttggaaaagggaagttgtttctcaccatgggaaaactaattttgaccgttagattaa 206  Q
    |||||| |||||  ||| |||||| ||||||||| ||||||||||||  ||| ||||||| |||||||||    
T  27599211 ggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagttaaatttgaccattagattaa 27599280  T

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Target: scaffold0071 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 11931 - 11882
Alignment:
Q  172 caccatgggaaaactaattttgaccgttagattaaatagagaacatattt 221  Q
    ||||||||||||  |||| |||||| ||||||||| ||||||||||||||    
T  11931 caccatgggaaagttaatcttgaccattagattaagtagagaacatattt 11882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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