View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3062_low_53 (Length: 227)
Name: NF3062_low_53
Description: NF3062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3062_low_53 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 5325153 - 5325373
Alignment:
| Q |
7 |
catcaaccaagtcaccatcatcgttacatttatctggatgcttaaatacatctaggtagaactcaggtttattgatgaaatgaatatcaaggaaaacccc |
106 |
Q |
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| T |
5325153 |
catcaaccaagtcaccatcatcgttacatttatctggatgcttaaatacatctaggtagaactcaggtttattgatgaaatgaatatcaaggaaaacccc |
5325252 |
T |
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| Q |
107 |
gatttggcagagatgatgctgtgcttttcctccaccaaaggctcctccaacactcacaatggcagcaggctttccagcccaaacatttggtggtcttgat |
206 |
Q |
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| T |
5325253 |
gatttggcggagatgatgctgtgcttttcctccaccaaaggctcctccaacactcacaatggcagcaggctttccagcccaaacatttggtggtcttgat |
5325352 |
T |
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| Q |
207 |
gcccaatcaattgcattcttt |
227 |
Q |
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| T |
5325353 |
gcccaatcaattgcattcttt |
5325373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 5338173 - 5338393
Alignment:
| Q |
7 |
catcaaccaagtcaccatcatcgttacatttatctggatgcttaaatacatctaggtagaactcaggtttattgatgaaatgaatatcaaggaaaacccc |
106 |
Q |
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|||||||||||||||||||||||| | |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
5338173 |
catcaaccaagtcaccatcatcgtcaaatttatctggatgcttaaatacatctagatggaactcaggtttattgatgaaatgaatatcaaggaaaacccc |
5338272 |
T |
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| Q |
107 |
gatttggcagagatgatgctgtgcttttcctccaccaaaggctcctccaacactcacaatggcagcaggctttccagcccaaacatttggtggtcttgat |
206 |
Q |
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| T |
5338273 |
gatttggcggagatgatgttgagcttttcctccaccaaaggctcctccaacactcactatggcagcagttttaccagcccatacatttggtggtcttgat |
5338372 |
T |
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| Q |
207 |
gcccaatcaattgcattcttt |
227 |
Q |
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| T |
5338373 |
ccccaatcaagtgcattcttt |
5338393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 66 - 227
Target Start/End: Complemental strand, 5351899 - 5351738
Alignment:
| Q |
66 |
aactcaggtttattgatgaaatgaatatcaaggaaaaccccgatttggcagagatgatgctgtgcttttcctccaccaaaggctcctccaacactcacaa |
165 |
Q |
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||||| ||||||||||||||||||| ||| | |||||| || ||||| | |||||||| |||| ||| | || || |||||||||||||||| | |
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| T |
5351899 |
aactcgggtttattgatgaaatgaagatcgatgaaaactccaatttgtcggagatgatagtgtgactttgcaccgccgtgtcctcctccaacactcacta |
5351800 |
T |
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| Q |
166 |
tggcagcaggctttccagcccaaacatttggtggtcttgatgcccaatcaattgcattcttt |
227 |
Q |
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| T |
5351799 |
tggcagcagactttccagcccaaacatttggtggtcttgatgcccaatcaattgcattcttt |
5351738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 72 - 227
Target Start/End: Complemental strand, 5344875 - 5344720
Alignment:
| Q |
72 |
ggtttattgatgaaatgaatatcaaggaaaaccccgatttggcagagatgatgctgtgcttttcctccaccaaaggctcctccaacactcacaatggcag |
171 |
Q |
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|||||||| |||||||||| |||||||||||| |||||||| | |||||||| |||| |||| | |||||| |||||||| ||||||| ||||| | |
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| T |
5344875 |
ggtttatttatgaaatgaagatcaaggaaaactccgatttgtcggagatgatattgtgattttgcaccaccatgccctcctccagcactcactatggccg |
5344776 |
T |
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| Q |
172 |
caggctttccagcccaaacatttggtggtcttgatgcccaatcaattgcattcttt |
227 |
Q |
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|||| || ||||||||||||||||||| |||||||||||| |||| |||||||||| |
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| T |
5344775 |
caggtttaccagcccaaacatttggtgatcttgatgcccagtcaagtgcattcttt |
5344720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 180 - 226
Target Start/End: Original strand, 14535529 - 14535575
Alignment:
| Q |
180 |
ccagcccaaacatttggtggtcttgatgcccaatcaattgcattctt |
226 |
Q |
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| T |
14535529 |
ccagcccaaacatttggtggtctagatgcccaatcaattgcattctt |
14535575 |
T |
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