View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3062_low_59 (Length: 202)
Name: NF3062_low_59
Description: NF3062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3062_low_59 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 150; Significance: 2e-79; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 13 - 202
Target Start/End: Original strand, 28811840 - 28812029
Alignment:
| Q |
13 |
aatataccagaatcggaagcaactatcttttcctaataagataaaaaactaaattttacttacgagagtaataagtgtaactttactttcccttnnnnnn |
112 |
Q |
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| T |
28811840 |
aatataccagaatcggaagcaactatcttttcctaataagataaaaaacttaattttacttacgagagtaataagtgtaactttactttcccttaaaaaa |
28811939 |
T |
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| Q |
113 |
nnnnnngtgtaactttacttacccgcagaaaaggcgtcccataagaagaactgctaccgagttaagatcataggccaatgcatacatgat |
202 |
Q |
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| T |
28811940 |
caaaaagtgtaactttacttacccgcagaaaaggcgtcccataagaagaactgctaccgagttaagatcataggccaatgcatacatgat |
28812029 |
T |
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Target: chr7; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 119 - 199
Target Start/End: Complemental strand, 33413595 - 33413515
Alignment:
| Q |
119 |
gtgtaactttacttacccgcagaaaaggcgtcccataagaagaactgctaccgagttaagatcataggccaatgcatacat |
199 |
Q |
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| T |
33413595 |
gtgtatctttacttacacgcagaaaatacgtcccataagaagaactactactgagttgagatcataggccattgcatacat |
33413515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 126 - 202
Target Start/End: Complemental strand, 33420733 - 33420657
Alignment:
| Q |
126 |
tttacttacccgcagaaaaggcgtcccataagaagaactgctaccgagttaagatcataggccaatgcatacatgat |
202 |
Q |
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| T |
33420733 |
tttacttactcgcagaaaaggcgtcccataagaagaactactactgagttgagatgataggccattgcatacttgat |
33420657 |
T |
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