View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3062_low_8 (Length: 430)
Name: NF3062_low_8
Description: NF3062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3062_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Original strand, 42126189 - 42126604
Alignment:
| Q |
1 |
acatgcgatgtttgtaacttcatgttcaaataacacaactgctatcatatggaatgatgttttgagcaataaagcatggattcttgcatctaattaccgg |
100 |
Q |
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| T |
42126189 |
acatgcgatgtttgtaatttcatgttcaaataacacaactgctatcatatggaatgatgttttgagcaataaagcatggattcttgcatctaattaccgg |
42126288 |
T |
|
| Q |
101 |
aaaacaaatttaaaagttttgcatggtattggaatataaaatgttttgctgcttggaactaacctctttaacattattaagctttgcagttttaagaaca |
200 |
Q |
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| T |
42126289 |
aaaacaaatttaaaagttttgcatggtattggaatataaaatgttttggtgcttggaactaacctctttaacattattaagctttgcagttttaagaaca |
42126388 |
T |
|
| Q |
201 |
tgttggcctccttcaactttttgtagtggttgtatctcagctccttctttgataatacttcctttttgaataacatcataaggtccaatcgaagaatttc |
300 |
Q |
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| T |
42126389 |
tgttggcctccttcaactttttgtagtggttgtatctcagctccttctttgataatacttcctttttgaataacagcataaggtccaatcgaagaatttc |
42126488 |
T |
|
| Q |
301 |
ggccaatccttataggatggagactaagaattccattttttacctcatggctttgaaccaaaaccccttcagagatgacagcttcatcaccaattgaaac |
400 |
Q |
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| T |
42126489 |
ggccaatccttataggatggagactaagaattccattttttacctcatggctttgaaccaaaaccccttcagagatgacagcttcatcaccaattgaaac |
42126588 |
T |
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| Q |
401 |
tagagacgggtctgtg |
416 |
Q |
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| T |
42126589 |
tagagacgggtctgtg |
42126604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 252 - 397
Target Start/End: Original strand, 24929735 - 24929880
Alignment:
| Q |
252 |
ataatacttcctttttgaataacatcataaggtccaatcgaagaatttcggccaatccttataggatggagactaagaattccattttttacctcatggc |
351 |
Q |
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|||| |||||| ||||||| |||| ||||||||||||| |||||| | |||||| | || ||||||||||| ||||||||||| ||||||||||||| |
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| T |
24929735 |
ataacacttccgttttgaacaacagcataaggtccaatagaagaacattttccaatcttaatgggatggagacttagaattccattctttacctcatggc |
24929834 |
T |
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| Q |
352 |
tttgaaccaaaaccccttcagagatgacagcttcatcaccaattga |
397 |
Q |
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| T |
24929835 |
tttgaaccaaaacaccttctgcaacgacagcttcatctccgattga |
24929880 |
T |
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