View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3062_low_9 (Length: 427)
Name: NF3062_low_9
Description: NF3062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3062_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 4 - 412
Target Start/End: Original strand, 1249492 - 1249900
Alignment:
| Q |
4 |
atgtcgaagaatatccaaaaaaggtaactggacaggcagctccactgtcgttgacaatcggtaaacattgctaactgtgtaaccttttccgtagtaagtt |
103 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1249492 |
atgtcgaataagatccaaaaaaggtaactggacagggagctccactgtctttgacaatcggtaaacattgctaactgtgtaaccttttccgtcgtaagtt |
1249591 |
T |
|
| Q |
104 |
tagtcttttattttcaaaatcggtaaacattgctaactgtataggcatggtttacctatggagtcttccttaaactgtgtgttgtgtgaggggattttgg |
203 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1249592 |
ttgtcttttattttcaaaatcggtaaacattgctaactgtataggcatggtttacctctggagtcttccttaaactgtgtgttgtgtgaggggattttgg |
1249691 |
T |
|
| Q |
204 |
aaccgacaaaccatttgcttcttcgctgtgtgtttgctaaaggggtgtgggatggtttatttaagggctaccggttaatttagcatgcggcagtgtggag |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1249692 |
aaccgacaaaccatttgcttcttcgctgtgtgtttgctaaagtggtgtgggatggtttatttaagggctaccggttaatttagcatgcggcagtgtggag |
1249791 |
T |
|
| Q |
304 |
catttggagggcgagaagcgaccgcatcttcaataattcagttcgcgaggtggaggagattgtggaaactaaggttttgtcctggatggaccttgactcg |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1249792 |
catttggagggcgagaagcgaccgcatcttcaataattcagttcgcgaggtggaggagattgtggaaactaaggttttgtcctggacggaccttgactcg |
1249891 |
T |
|
| Q |
404 |
gttgaaggt |
412 |
Q |
| |
|
||||||||| |
|
|
| T |
1249892 |
gttgaaggt |
1249900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 276 - 371
Target Start/End: Original strand, 17103596 - 17103691
Alignment:
| Q |
276 |
ggttaatttagcatgcggcagtgtggagcatttggagggcgagaagcgaccgcatcttcaataattcagttcgcgaggtggaggagattgtggaaa |
371 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||| |||||||| |||||| ||||||||||| ||||| ||| || ||||||||||||||||| |
|
|
| T |
17103596 |
ggttaatttggcatgcggtggtgtggagcatttggatggcgagaaacgaccgtatcttcaataactcagtccgcacggcggaggagattgtggaaa |
17103691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University