View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3063_high_10 (Length: 443)
Name: NF3063_high_10
Description: NF3063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3063_high_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 11 - 426
Target Start/End: Original strand, 26618315 - 26618730
Alignment:
| Q |
11 |
cacagactcagcaacgtacctcatcagagacagcatctggagtagttataacttcggaaagttcaaatactcaagggaagaacaacaactaataaatact |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26618315 |
cacagactcagcaacgtacctcatcagagacagcatctggagtagttataacttcggaaagttcaaatactcaagggaagaacaacaactaataaatact |
26618414 |
T |
|
| Q |
111 |
atatannnnnnnttagtttcaacttgtataatcttcaaattcaatttcatcacattaatattcttcttcatctttttctacattattatatcctcaannn |
210 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
26618415 |
atatacccccccttagtttcaacttgtataatcttcaaattcaatttcatcacattaatattcttcttcatctttttctacattattatatcttcaattt |
26618514 |
T |
|
| Q |
211 |
nnnncggtccacatgacttgtgttcttcactatggcattccaaatttggactgattaatcaacttcatggagattattatcttcattatcttttctttgt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26618515 |
ttttcggtccacatgacttgtgttcttcactatggcattccaaatttggactgattaatcaacttcatggagattattatcttcattatcttttctttgt |
26618614 |
T |
|
| Q |
311 |
cttcaagcattttcacttgaaataattattaccaattaattatgttttcttttttagtaatgattctttctccaattttaattatgaactgaacatgtta |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26618615 |
cttcaagcattttcacttgaaataattattaccaattaattatgttttcttttttagtattgattctttctccaattttaattatgaactgaacatgtta |
26618714 |
T |
|
| Q |
411 |
catcttcgaataatgt |
426 |
Q |
| |
|
||||||||| |||||| |
|
|
| T |
26618715 |
catcttcgattaatgt |
26618730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University