View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3063_high_17 (Length: 399)

Name: NF3063_high_17
Description: NF3063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3063_high_17
NF3063_high_17
[»] chr1 (1 HSPs)
chr1 (10-374)||(42258860-42259225)
[»] scaffold0055 (8 HSPs)
scaffold0055 (259-320)||(17970-18031)
scaffold0055 (259-320)||(20655-20716)
scaffold0055 (259-320)||(23894-23955)
scaffold0055 (259-320)||(29282-29343)
scaffold0055 (259-320)||(37127-37188)
scaffold0055 (259-320)||(44976-45037)
scaffold0055 (259-320)||(57701-57762)
scaffold0055 (259-320)||(76392-76453)
[»] scaffold0052 (8 HSPs)
scaffold0052 (259-320)||(8883-8944)
scaffold0052 (259-320)||(12085-12146)
scaffold0052 (259-320)||(16575-16636)
scaffold0052 (259-320)||(20898-20959)
scaffold0052 (259-320)||(39869-39930)
scaffold0052 (259-320)||(43295-43356)
scaffold0052 (259-320)||(55305-55366)
scaffold0052 (259-320)||(66722-66783)
[»] scaffold0515 (1 HSPs)
scaffold0515 (259-320)||(10123-10184)
[»] scaffold0152 (2 HSPs)
scaffold0152 (259-320)||(27743-27804)
scaffold0152 (259-320)||(36519-36580)
[»] scaffold0986 (1 HSPs)
scaffold0986 (287-320)||(212-245)
[»] chr8 (1 HSPs)
chr8 (274-318)||(43868909-43868953)
[»] chr2 (1 HSPs)
chr2 (271-299)||(16352841-16352869)


Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 10 - 374
Target Start/End: Complemental strand, 42259225 - 42258860
Alignment:
Q  10 attatactaataacagaaatttagggagcaaaaatatgaaattcatctctaatttactcgctaaactaagttatcaaagaatttgtgagtggtttcatta 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  42259225 attatactaataacagaaatttagggagcaaaaatatgaaattcatctctaatttgctcactaaactaagttatcaaagaatttgtgagtggtttcatta 42259126  T
Q  110 ttannnnnnnnactgtaagacttttatgtgaagattagggaaagttcaaaaagttgctcaacaaatatacagatcatgactttgatgatcttcaacaatt 209  Q
    |||        | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  42259125 ttattatttttattgtaagacttttatgtgaagattagggaaagttcaaaaagttgctcaataaatatacagatcatgactttgatgatcttcaacaatt 42259026  T
Q  210 gtaaatcttctgcattaagtttgagaccaaattcaaagatc--nnnnnnnnagggacgaatcaaagcgacaagggttgaatctcagtggatcatggcagc 307  Q
    |||||||||||||||| |||||||||||||||||||| |||          |||||||||||||| |||||||||||||||||||||||||| |||||||    
T  42259025 gtaaatcttctgcatt-agtttgagaccaaattcaaatatcatttttttttagggacgaatcaaaacgacaagggttgaatctcagtggatcgtggcagc 42258927  T
Q  308 aaggccactctgcttcaaagatcattattgatacctcagtgtaatataatagttaagtcatagtgca 374  Q
    ||||||||||| |||||||||||||||||||||||||  || ||||||||||||||||||| |||||    
T  42258926 aaggccactctacttcaaagatcattattgatacctctctgcaatataatagttaagtcatggtgca 42258860  T

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Target: scaffold0055 (Bit Score: 50; Significance: 2e-19; HSPs: 8)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 259 - 320
Target Start/End: Complemental strand, 18031 - 17970
Alignment:
Q  259 agggacgaatcaaagcgacaagggttgaatctcagtggatcatggcagcaaggccactctgc 320  Q
    ||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  18031 agggacgaatcgaagcgacaagggctgaatctcagtggatcgtggcagcaaggccactctgc 17970  T

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Target: scaffold0055; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 259 - 320
Target Start/End: Original strand, 20655 - 20716
Alignment:
Q  259 agggacgaatcaaagcgacaagggttgaatctcagtggatcatggcagcaaggccactctgc 320  Q
    ||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  20655 agggacgaatcgaagcgacaagggctgaatctcagtggatcgtggcagcaaggccactctgc 20716  T

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Target: scaffold0055; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 259 - 320
Target Start/End: Original strand, 23894 - 23955
Alignment:
Q  259 agggacgaatcaaagcgacaagggttgaatctcagtggatcatggcagcaaggccactctgc 320  Q
    ||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  23894 agggacgaatcgaagcgacaagggctgaatctcagtggatcgtggcagcaaggccactctgc 23955  T

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Target: scaffold0055; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 259 - 320
Target Start/End: Complemental strand, 29343 - 29282
Alignment:
Q  259 agggacgaatcaaagcgacaagggttgaatctcagtggatcatggcagcaaggccactctgc 320  Q
    ||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  29343 agggacgaatcgaagcgacaagggctgaatctcagtggatcgtggcagcaaggccactctgc 29282  T

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Target: scaffold0055; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 259 - 320
Target Start/End: Original strand, 37127 - 37188
Alignment:
Q  259 agggacgaatcaaagcgacaagggttgaatctcagtggatcatggcagcaaggccactctgc 320  Q
    ||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  37127 agggacgaatcgaagcgacaagggctgaatctcagtggatcgtggcagcaaggccactctgc 37188  T

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Target: scaffold0055; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 259 - 320
Target Start/End: Original strand, 44976 - 45037
Alignment:
Q  259 agggacgaatcaaagcgacaagggttgaatctcagtggatcatggcagcaaggccactctgc 320  Q
    ||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  44976 agggacgaatcgaagcgacaagggctgaatctcagtggatcgtggcagcaaggccactctgc 45037  T

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Target: scaffold0055; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 259 - 320
Target Start/End: Original strand, 57701 - 57762
Alignment:
Q  259 agggacgaatcaaagcgacaagggttgaatctcagtggatcatggcagcaaggccactctgc 320  Q
    ||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  57701 agggacgaatcgaagcgacaagggctgaatctcagtggatcgtggcagcaaggccactctgc 57762  T

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Target: scaffold0055; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 259 - 320
Target Start/End: Original strand, 76392 - 76453
Alignment:
Q  259 agggacgaatcaaagcgacaagggttgaatctcagtggatcatggcagcaaggccactctgc 320  Q
    ||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  76392 agggacgaatcgaagcgacaagggctgaatctcagtggatcgtggcagcaaggccactctgc 76453  T

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Target: scaffold0052 (Bit Score: 50; Significance: 2e-19; HSPs: 8)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 259 - 320
Target Start/End: Original strand, 8883 - 8944
Alignment:
Q  259 agggacgaatcaaagcgacaagggttgaatctcagtggatcatggcagcaaggccactctgc 320  Q
    ||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  8883 agggacgaatcgaagcgacaagggctgaatctcagtggatcgtggcagcaaggccactctgc 8944  T

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Target: scaffold0052; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 259 - 320
Target Start/End: Original strand, 12085 - 12146
Alignment:
Q  259 agggacgaatcaaagcgacaagggttgaatctcagtggatcatggcagcaaggccactctgc 320  Q
    ||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  12085 agggacgaatcgaagcgacaagggctgaatctcagtggatcgtggcagcaaggccactctgc 12146  T

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Target: scaffold0052; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 259 - 320
Target Start/End: Complemental strand, 16636 - 16575
Alignment:
Q  259 agggacgaatcaaagcgacaagggttgaatctcagtggatcatggcagcaaggccactctgc 320  Q
    ||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  16636 agggacgaatcgaagcgacaagggctgaatctcagtggatcgtggcagcaaggccactctgc 16575  T

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Target: scaffold0052; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 259 - 320
Target Start/End: Original strand, 20898 - 20959
Alignment:
Q  259 agggacgaatcaaagcgacaagggttgaatctcagtggatcatggcagcaaggccactctgc 320  Q
    ||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  20898 agggacgaatcgaagcgacaagggctgaatctcagtggatcgtggcagcaaggccactctgc 20959  T

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Target: scaffold0052; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 259 - 320
Target Start/End: Complemental strand, 39930 - 39869
Alignment:
Q  259 agggacgaatcaaagcgacaagggttgaatctcagtggatcatggcagcaaggccactctgc 320  Q
    ||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  39930 agggacgaatcgaagcgacaagggctgaatctcagtggatcgtggcagcaaggccactctgc 39869  T

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Target: scaffold0052; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 259 - 320
Target Start/End: Original strand, 43295 - 43356
Alignment:
Q  259 agggacgaatcaaagcgacaagggttgaatctcagtggatcatggcagcaaggccactctgc 320  Q
    ||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  43295 agggacgaatcgaagcgacaagggctgaatctcagtggatcgtggcagcaaggccactctgc 43356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 259 - 320
Target Start/End: Original strand, 55305 - 55366
Alignment:
Q  259 agggacgaatcaaagcgacaagggttgaatctcagtggatcatggcagcaaggccactctgc 320  Q
    ||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  55305 agggacgaatcgaagcgacaagggctgaatctcagtggatcgtggcagcaaggccactctgc 55366  T

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Target: scaffold0052; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 259 - 320
Target Start/End: Original strand, 66722 - 66783
Alignment:
Q  259 agggacgaatcaaagcgacaagggttgaatctcagtggatcatggcagcaaggccactctgc 320  Q
    ||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  66722 agggacgaatcgaagcgacaagggctgaatctcagtggatcgtggcagcaaggccactctgc 66783  T

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Target: scaffold0515 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 259 - 320
Target Start/End: Complemental strand, 10184 - 10123
Alignment:
Q  259 agggacgaatcaaagcgacaagggttgaatctcagtggatcatggcagcaaggccactctgc 320  Q
    ||||||||||| |||||||||||| | |||||||||||||| ||||||||||||||||||||    
T  10184 agggacgaatcgaagcgacaagggctaaatctcagtggatcgtggcagcaaggccactctgc 10123  T

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Target: scaffold0152 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 259 - 320
Target Start/End: Complemental strand, 27804 - 27743
Alignment:
Q  259 agggacgaatcaaagcgacaagggttgaatctcagtggatcatggcagcaaggccactctgc 320  Q
    ||||||||||| |||||||||||| | |||||||||||||| ||||||||||||||||||||    
T  27804 agggacgaatcgaagcgacaagggctaaatctcagtggatcgtggcagcaaggccactctgc 27743  T

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Target: scaffold0152; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 259 - 320
Target Start/End: Complemental strand, 36580 - 36519
Alignment:
Q  259 agggacgaatcaaagcgacaagggttgaatctcagtggatcatggcagcaaggccactctgc 320  Q
    ||||||||||| |||||||||||| | |||||||||||||| ||||||||||||||||||||    
T  36580 agggacgaatcgaagcgacaagggctaaatctcagtggatcgtggcagcaaggccactctgc 36519  T

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Target: scaffold0986 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0986
Description:

Target: scaffold0986; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 320
Target Start/End: Complemental strand, 245 - 212
Alignment:
Q  287 atctcagtggatcatggcagcaaggccactctgc 320  Q
    ||||||||||||| ||||||||||||||||||||    
T  245 atctcagtggatcgtggcagcaaggccactctgc 212  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 318
Target Start/End: Original strand, 43868909 - 43868953
Alignment:
Q  274 cgacaagggttgaatctcagtggatcatggcagcaaggccactct 318  Q
    |||| |||||||||||||||| |||| ||||||||||| ||||||    
T  43868909 cgactagggttgaatctcagtagatcgtggcagcaaggtcactct 43868953  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 299
Target Start/End: Complemental strand, 16352869 - 16352841
Alignment:
Q  271 aagcgacaagggttgaatctcagtggatc 299  Q
    |||||||||||||||||||||||||||||    
T  16352869 aagcgacaagggttgaatctcagtggatc 16352841  T

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