View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3063_high_19 (Length: 390)
Name: NF3063_high_19
Description: NF3063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3063_high_19 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 17 - 380
Target Start/End: Original strand, 24165258 - 24165623
Alignment:
| Q |
17 |
catttttggcatggactccttgtccataaatgccgagggaaaccttgacctcctttgcttacccgacgagcaacttctagcctgaaaatatagtttcaga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24165258 |
catttttggcatggactccttgtccataaatgccgagggaaaccttgacctcctttgcttacccgacgagcaacttctagcctgaaaatatagtttcaga |
24165357 |
T |
|
| Q |
117 |
tgaagttattgagagaatgtacaaattatgattcgatatggcatggtttccaaatgaactcttatacagattccta--gaattgagtatggaattgttca |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||| |
|
|
| T |
24165358 |
tgaagttattgagagaatgtacaaattatgattcgatatggcatggtttccaaatgaactcttatacagattcctatagaattgagtacggaattattca |
24165457 |
T |
|
| Q |
215 |
ataacctcaaggtttctatcatccatgactcgttgactagtttcaggcttcatgctgccactggtgccatatctgggcaaatggtaaggtgaaacagctc |
314 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24165458 |
ataacctcaagatttctatcatccatgactcgttgactagtttcaggcttcatgctgccactggtgccatatctgggcaaatggtaaggtgaaacagctc |
24165557 |
T |
|
| Q |
315 |
ttcgttttggagactctgaaatgtttcgagcattcccagctttcaactgctccagttctgtttctt |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24165558 |
ttcgttttggagactctgaaatgtttcgagcattcccagctttcaactgctccagttctgtttctt |
24165623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 211 - 321
Target Start/End: Original strand, 42233415 - 42233525
Alignment:
| Q |
211 |
ttcaataacctcaaggtttctatcatccatgactcgttgactagtttcaggcttcatgctgccactggtgccatatctgggcaaatggtaaggtgaaaca |
310 |
Q |
| |
|
||||||||||||| | |||||||||||||| || ||||||| ||||||||||||||||||||||||| | |||| |||||| | || ||||||||||| |
|
|
| T |
42233415 |
ttcaataacctcagagcttctatcatccatggatctttgactattttcaggcttcatgctgccactggtactatatttgggcatacggaaaggtgaaaca |
42233514 |
T |
|
| Q |
311 |
gctcttcgttt |
321 |
Q |
| |
|
|||||| |||| |
|
|
| T |
42233515 |
gctcttggttt |
42233525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 114
Target Start/End: Original strand, 42232979 - 42233076
Alignment:
| Q |
17 |
catttttggcatggactccttgtccataaatgccgagggaaaccttgacctcctttgcttacccgacgagcaacttctagcctgaaaatatagtttca |
114 |
Q |
| |
|
||||||||| ||||| |||||||||||||||| |||||||| |||| ||| ||||| || ||||| || || || ||||||||||||||| ||||| |
|
|
| T |
42232979 |
catttttggtatggagtccttgtccataaatgttgagggaaatcttggccttctttgtttgcccgaagaataatttttagcctgaaaatataatttca |
42233076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University