View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3063_high_22 (Length: 338)
Name: NF3063_high_22
Description: NF3063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3063_high_22 |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 3e-88; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 5 - 181
Target Start/End: Original strand, 32924168 - 32924344
Alignment:
| Q |
5 |
cataattctcccaacccttgcattttagctggatttgatggtaaacacaagtttgtttcacaagttattgaagttttaagttgtttgttgaaacttaata |
104 |
Q |
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| T |
32924168 |
cataattctcccaacccttgcattttagctggatttgatggtaaacacaagttattttcacaagttattgaagttttaagttgtttgttgaaacttaata |
32924267 |
T |
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| Q |
105 |
tatgctaattatttaagagattaagttggctgaaacaactctcggtctagccgatcgttaggtcaggtatcgagttt |
181 |
Q |
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| T |
32924268 |
tatgctaattatttaagagattaagttggctgaaacaactctcggtctagccgatcgttaggtcaggtaccgagttt |
32924344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 224 - 325
Target Start/End: Original strand, 32924384 - 32924485
Alignment:
| Q |
224 |
ctaatatggtcgattttcgatttcacttttttaacattgcaatttttagaattaataacaaatgttctgtttttcaaagggacatacacatatgccggag |
323 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32924384 |
ctaatatggtcgattttcgatttcacttttttaatattgcaatttttagaattaataacaaatgttctgtttttcaaagggacatacacatatgctggag |
32924483 |
T |
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| Q |
324 |
aa |
325 |
Q |
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|| |
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| T |
32924484 |
aa |
32924485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 32912202 - 32912290
Alignment:
| Q |
1 |
cactcataattctcccaacccttgcattttagctggatttgatggtaaacacaagtttgtttcacaagttattgaagttttaagttgtt |
89 |
Q |
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| T |
32912202 |
cactcgtagttctcctaacccttgccttttagctggatttgatggtaaacacaagtttgtttcacaagttattgaagtttcaaattgtt |
32912290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 11824635 - 11824691
Alignment:
| Q |
1 |
cactcataattctcccaacccttgcattttagctggatttgatggtaaacacaagtt |
57 |
Q |
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| T |
11824635 |
cactcataattctcctaacccttgcattttagctggatttgatggtaaatacaagtt |
11824691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 325
Target Start/End: Original strand, 11824778 - 11824826
Alignment:
| Q |
277 |
aataacaaatgttctgtttttcaaagggacatacacatatgccggagaa |
325 |
Q |
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|||||||||| || ||||||| ||||||||||||| |||||| |||||| |
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| T |
11824778 |
aataacaaatattttgtttttgaaagggacatacagatatgctggagaa |
11824826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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