View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3063_high_26 (Length: 302)

Name: NF3063_high_26
Description: NF3063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3063_high_26
NF3063_high_26
[»] chr3 (19 HSPs)
chr3 (1-287)||(38684674-38684960)
chr3 (87-199)||(9198185-9198297)
chr3 (87-189)||(32326154-32326256)
chr3 (67-189)||(44560131-44560252)
chr3 (96-212)||(1384154-1384270)
chr3 (95-189)||(36879054-36879148)
chr3 (87-189)||(37083814-37083916)
chr3 (88-212)||(21366405-21366530)
chr3 (132-188)||(31466013-31466069)
chr3 (138-212)||(1384776-1384850)
chr3 (132-189)||(20873206-20873263)
chr3 (145-224)||(13800008-13800087)
chr3 (132-189)||(32582466-32582523)
chr3 (78-195)||(43822486-43822603)
chr3 (97-189)||(32109492-32109584)
chr3 (142-181)||(12122841-12122880)
chr3 (143-202)||(44539149-44539208)
chr3 (137-211)||(45021461-45021535)
chr3 (79-185)||(3729681-3729783)
[»] chr5 (19 HSPs)
chr5 (97-224)||(4283077-4283205)
chr5 (76-224)||(6462367-6462515)
chr5 (87-211)||(17259418-17259542)
chr5 (79-189)||(41892911-41893021)
chr5 (132-189)||(16869953-16870010)
chr5 (97-189)||(1621557-1621649)
chr5 (132-222)||(17902656-17902746)
chr5 (67-190)||(22028655-22028778)
chr5 (142-212)||(13838856-13838926)
chr5 (78-207)||(34639743-34639872)
chr5 (63-195)||(32882664-32882796)
chr5 (67-189)||(2941874-2941995)
chr5 (123-212)||(10350499-10350590)
chr5 (97-190)||(34590201-34590294)
chr5 (97-189)||(28363411-28363503)
chr5 (63-159)||(5260414-5260509)
chr5 (143-187)||(9004844-9004888)
chr5 (173-213)||(30838659-30838699)
chr5 (145-189)||(31812082-31812126)
[»] chr8 (14 HSPs)
chr8 (63-189)||(41470029-41470155)
chr8 (63-189)||(43408490-43408615)
chr8 (82-190)||(18892295-18892403)
chr8 (97-208)||(24523816-24523927)
chr8 (67-196)||(32467766-32467894)
chr8 (81-211)||(38288864-38288994)
chr8 (142-242)||(2595230-2595330)
chr8 (63-165)||(14354557-14354659)
chr8 (132-189)||(27316672-27316729)
chr8 (76-189)||(29861299-29861410)
chr8 (63-188)||(8172942-8173067)
chr8 (112-216)||(38529761-38529865)
chr8 (140-181)||(43129689-43129730)
chr8 (183-242)||(5111611-5111670)
[»] chr2 (14 HSPs)
chr2 (114-224)||(27679067-27679177)
chr2 (121-203)||(31062945-31063027)
chr2 (132-189)||(12359866-12359923)
chr2 (135-196)||(35189319-35189380)
chr2 (85-165)||(38808967-38809047)
chr2 (143-211)||(44809849-44809917)
chr2 (132-184)||(44810071-44810123)
chr2 (122-185)||(44984345-44984408)
chr2 (121-211)||(35817095-35817185)
chr2 (114-209)||(40808450-40808545)
chr2 (135-184)||(5330497-5330546)
chr2 (140-189)||(15804425-15804474)
chr2 (67-183)||(15967759-15967875)
chr2 (102-197)||(40660220-40660316)
[»] chr4 (24 HSPs)
chr4 (76-188)||(39276311-39276423)
chr4 (98-189)||(21501595-21501686)
chr4 (132-189)||(3535180-3535237)
chr4 (67-189)||(20988821-20988944)
chr4 (87-189)||(26026645-26026747)
chr4 (55-189)||(52831390-52831524)
chr4 (135-189)||(44555713-44555767)
chr4 (143-224)||(17425650-17425731)
chr4 (154-212)||(22347419-22347477)
chr4 (143-189)||(24418246-24418292)
chr4 (135-227)||(30070159-30070250)
chr4 (143-208)||(12637603-12637668)
chr4 (96-197)||(13615215-13615316)
chr4 (98-185)||(26552200-26552287)
chr4 (98-194)||(31235485-31235583)
chr4 (191-242)||(32474831-32474882)
chr4 (169-212)||(41173816-41173859)
chr4 (143-189)||(37713218-37713264)
chr4 (135-184)||(5646011-5646060)
chr4 (27-165)||(25885889-25886023)
chr4 (179-224)||(47987084-47987129)
chr4 (250-286)||(42617407-42617443)
chr4 (145-189)||(47789510-47789554)
chr4 (154-206)||(52714331-52714383)
[»] scaffold0040 (1 HSPs)
scaffold0040 (76-189)||(49907-50020)
[»] chr7 (19 HSPs)
chr7 (66-167)||(12473524-12473625)
chr7 (97-224)||(44235466-44235593)
chr7 (136-214)||(29234675-29234753)
chr7 (169-224)||(12473109-12473164)
chr7 (133-207)||(24887920-24887994)
chr7 (112-183)||(7583563-7583634)
chr7 (129-184)||(32727914-32727969)
chr7 (136-189)||(13438446-13438499)
chr7 (88-189)||(28175591-28175692)
chr7 (132-183)||(7571399-7571450)
chr7 (132-183)||(7577814-7577865)
chr7 (132-183)||(7580176-7580227)
chr7 (159-210)||(24432751-24432802)
chr7 (142-181)||(44571032-44571071)
chr7 (87-193)||(18654693-18654799)
chr7 (143-181)||(25696134-25696172)
chr7 (135-181)||(33982275-33982321)
chr7 (142-198)||(44818821-44818878)
chr7 (133-189)||(15050841-15050897)
[»] chr1 (25 HSPs)
chr1 (87-186)||(52596278-52596377)
chr1 (37-150)||(2774172-2774285)
chr1 (135-215)||(10518245-10518325)
chr1 (78-197)||(1415694-1415813)
chr1 (87-189)||(22593647-22593750)
chr1 (113-196)||(35926667-35926750)
chr1 (102-224)||(42747589-42747711)
chr1 (140-189)||(20003997-20004046)
chr1 (79-186)||(31117739-31117848)
chr1 (155-212)||(20791949-20792006)
chr1 (87-187)||(30418373-30418471)
chr1 (63-198)||(21516652-21516787)
chr1 (67-190)||(28736207-28736330)
chr1 (63-189)||(32359125-32359251)
chr1 (142-198)||(42330295-42330352)
chr1 (143-211)||(2774335-2774403)
chr1 (67-228)||(7583382-7583535)
chr1 (250-285)||(3949695-3949730)
chr1 (155-202)||(7097731-7097778)
chr1 (95-178)||(35058566-35058649)
chr1 (137-224)||(38785780-38785867)
chr1 (137-187)||(15942491-15942541)
chr1 (139-189)||(38322120-38322170)
chr1 (63-119)||(3160450-3160506)
chr1 (143-187)||(46315642-46315686)
[»] chr6 (7 HSPs)
chr6 (63-241)||(6909539-6909717)
chr6 (73-197)||(9749947-9750070)
chr6 (100-224)||(9750152-9750274)
chr6 (87-198)||(9195470-9195581)
chr6 (135-189)||(4912375-4912429)
chr6 (87-227)||(2255203-2255341)
chr6 (181-238)||(8014527-8014584)
[»] scaffold0010 (1 HSPs)
scaffold0010 (88-189)||(166560-166659)
[»] scaffold0027 (1 HSPs)
scaffold0027 (135-211)||(7933-8010)
[»] scaffold0004 (1 HSPs)
scaffold0004 (143-189)||(339035-339080)


Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 38684960 - 38684674
Alignment:
Q  1 acatgagaaaacatgaagactaaggttctgtttggaaagcacaataagctagcatatagttgatagcttatcagttcatatgactgaaaaagatccgttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  38684960 acatgagaaaacatgaagactaaggttctgtttggaaagcacaataagctagcatatagttaatagcttatcagttcatatgactgaaaaagatccgttt 38684861  T
Q  101 ggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcgttttttgataagtttattcaagtagcttatagcttaaagcttataac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  38684860 ggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcgttttttgataagctaattcaagtagcttatagcttaaagcttataac 38684761  T
Q  201 ttatcattttttctctaaattttatcccatttatcttaattgnnnnnnnttaaatactaactaaacatatcttttttatgtcattac 287  Q
    ||||||||||||||||||||||||||||| ||||||||||||       ||||||||||||||||||||||||||||||||||||||    
T  38684760 ttatcattttttctctaaattttatcccagttatcttaattgaaaaaaattaaatactaactaaacatatcttttttatgtcattac 38684674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 87 - 199
Target Start/End: Complemental strand, 9198297 - 9198185
Alignment:
Q  87 aaaaagatccgtttggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcgttttttgataagtttattcaagtagcttatagc 186  Q
    ||||||| |||||| |||||||||| ||||||| ||||||  |  |||||||||||||||||||||| ||||||||||| | ||||||||||||| ||||    
T  9198297 aaaaagacccgtttagtaaccgtcactttctcacgagcttaaagcttatttttactagcttatagcggtttttgataagctaattcaagtagcttttagc 9198198  T
Q  187 ttaaagcttataa 199  Q
    ||||| |||||||    
T  9198197 ttaaaacttataa 9198185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 87 - 189
Target Start/End: Complemental strand, 32326256 - 32326154
Alignment:
Q  87 aaaaagatccgtttggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcgttttttgataagtttattcaagtagcttatagc 186  Q
    ||||||| |||||||||| |||||| |||||||  ||||||||  |||||||||||||||||||| | ||||||||||| | ||||||||||||||||||    
T  32326256 aaaaagacccgtttggtatccgtcactttctcacaagcttgtagcttatttttactagcttatagaggtttttgataagctaattcaagtagcttatagc 32326157  T
Q  187 tta 189  Q
    |||    
T  32326156 tta 32326154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 67 - 189
Target Start/End: Original strand, 44560131 - 44560252
Alignment:
Q  67 cttatcagttcatatgactgaaaaagatccgtttggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcgttttttgataagt 166  Q
    ||||| ||||||||||||| |||||||   ||||||||||||||||||||||| ||| || ||| |||||||||||| | || || |||||||||||||     
T  44560131 cttataagttcatatgactaaaaaagacatgtttggtaaccgtcattttctcacgagtttataatttatttttactatcctaaagtgttttttgataagc 44560230  T
Q  167 ttattcaagtagcttatagctta 189  Q
    | |||| ||||||||||||||||    
T  44560231 taattc-agtagcttatagctta 44560252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 96 - 212
Target Start/End: Original strand, 1384154 - 1384270
Alignment:
Q  96 cgtttggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcgttttttgataagtttattcaagtagcttatagcttaaagctt 195  Q
    ||||||||||| |||||||| |||  ||||| |   |||||||||  ||||||| |||||||||||||  || | |||||||||||||||||||||||||    
T  1384154 cgtttggtaactgtcattttatcacaagcttattgcttatttttataagcttatcgcgttttttgatagattaactcaagtagcttatagcttaaagctt 1384253  T
Q  196 ataacttatcatttttt 212  Q
    ||||||||||| |||||    
T  1384254 ataacttatcacttttt 1384270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 95 - 189
Target Start/End: Complemental strand, 36879148 - 36879054
Alignment:
Q  95 ccgtttggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcgttttttgataagtttattcaagtagcttatagctta 189  Q
    |||||||||||| |||| ||||||| | | || ||| ||||||||||||||||||||| |||||| ||||| | |||||||||||||| ||||||    
T  36879148 ccgtttggtaactgtcactttctcatgggattataacttatttttactagcttatagcatttttttataagctaattcaagtagcttagagctta 36879054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 87 - 189
Target Start/End: Original strand, 37083814 - 37083916
Alignment:
Q  87 aaaaagatccgtttggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcgttttttgataagtttattcaagtagcttatagc 186  Q
    |||||||  |||| |||||| |||| ||||||| |||||| ||  |||||||||||||||||||||  ||||| ||||| | ||||||||||||||||||    
T  37083814 aaaaagacacgttaggtaactgtcactttctcacgagcttatagcttatttttactagcttatagcaatttttaataagctaattcaagtagcttatagc 37083913  T
Q  187 tta 189  Q
    |||    
T  37083914 tta 37083916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 88 - 212
Target Start/End: Original strand, 21366405 - 21366530
Alignment:
Q  88 aaaagatccgtttggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcgttttttgataagtttattcaagtagcttatagct 187  Q
    |||||||  |||| |||||||| | |||||||  ||||| ||| |||||||||| | ||| || |||||||||| ||||| ||||||||| |||||| ||    
T  21366405 aaaagatttgtttcgtaaccgttactttctcataagcttataacttatttttaccaacttgtaacgttttttgacaagttaattcaagtaacttataact 21366504  T
Q  188 taaa-gcttataacttatcatttttt 212  Q
    |||| ||||||||| |||||| ||||    
T  21366505 taaaagcttataacatatcatatttt 21366530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 31466069 - 31466013
Alignment:
Q  132 ttatttttactagcttatagcgttttttgataagtttattcaagtagcttatagctt 188  Q
    |||||||||||||||||||| |||||||||||| || |||||||||| |||||||||    
T  31466069 ttatttttactagcttatagtgttttttgataatttaattcaagtagattatagctt 31466013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 212
Target Start/End: Complemental strand, 1384850 - 1384776
Alignment:
Q  138 ttactagcttatagcgttttttgataagtttattcaagtagcttatagcttaaagcttataacttatcatttttt 212  Q
    ||||||| |||||| ||| ||||||||| | ||||||||||||||| | ||||||||||| | ||||||||||||    
T  1384850 ttactagtttatagtgttgtttgataaggtaattcaagtagcttatggattaaagcttatgatttatcatttttt 1384776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 189
Target Start/End: Complemental strand, 20873263 - 20873206
Alignment:
Q  132 ttatttttactagcttatagcgttttttgataagtttattcaagtagcttatagctta 189  Q
    |||||||||||||||||||| | ||||||||||| | ||||||||| |||||||||||    
T  20873263 ttatttttactagcttatagtggtttttgataagctaattcaagtaacttatagctta 20873206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 224
Target Start/End: Complemental strand, 13800087 - 13800008
Alignment:
Q  145 cttatagcgttttttgataagtttattcaagtagcttatagcttaaagcttataacttatcattttttctctaaatttta 224  Q
    ||||||||||||||| ||||||| |||||||||| ||| ||  ||||| ||||| ||||||| ||||| ||| |||||||    
T  13800087 cttatagcgttttttcataagttaattcaagtaggttacagagtaaagtttatagcttatcactttttatctcaatttta 13800008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 189
Target Start/End: Original strand, 32582466 - 32582523
Alignment:
Q  132 ttatttttactagcttatagcgttttttgataagtttattcaagtagcttatagctta 189  Q
    ||||||||||||||||||||| ||||||||||||    ||||| ||||||||||||||    
T  32582466 ttatttttactagcttatagccttttttgataaggcagttcaactagcttatagctta 32582523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 195
Target Start/End: Original strand, 43822486 - 43822603
Alignment:
Q  78 atatgactgaaaaagatccgtttggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcgttttttgataagtttattcaagta 177  Q
    |||||| | |||||||||||||||||||  ||||||||  ||  ||||| ||  ||||||| |  || |||||| | ||||||||||| | |||||||||    
T  43822486 atatgattaaaaaagatccgtttggtaattgtcatttttacacaagcttatagcttattttcatgagattatagtggtttttgataagctaattcaagta 43822585  T
Q  178 gcttatagcttaaagctt 195  Q
    ||||| |||||| |||||    
T  43822586 gcttaaagcttatagctt 43822603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 189
Target Start/End: Original strand, 32109492 - 32109584
Alignment:
Q  97 gtttggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcgttttttgataagtttattcaagtagcttatagctta 189  Q
    ||||| |||| |||| |||| || |||||| ||  |||||||||  |||||| |||  ||||||||||| | |||||||||||||||||||||    
T  32109492 gtttgataactgtcactttcccatgagcttatagcttatttttaaaagcttaaagcaatttttgataagctaattcaagtagcttatagctta 32109584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 181
Target Start/End: Complemental strand, 12122880 - 12122841
Alignment:
Q  142 tagcttatagcgttttttgataagtttattcaagtagctt 181  Q
    |||||||||||||||||||||||| | |||||||||||||    
T  12122880 tagcttatagcgttttttgataagctaattcaagtagctt 12122841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 143 - 202
Target Start/End: Original strand, 44539149 - 44539208
Alignment:
Q  143 agcttatagcgttttttgataagtttattcaagtagcttatagcttaaagcttataactt 202  Q
    ||||||||| | ||||||||||| | |||||||||||| ||| |||||||||||| ||||    
T  44539149 agcttatagtggtttttgataagctaattcaagtagctaataacttaaagcttatcactt 44539208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 211
Target Start/End: Complemental strand, 45021535 - 45021461
Alignment:
Q  137 tttactagcttatagcgttttttgataagtttattcaagtagcttatagcttaaagcttataacttatcattttt 211  Q
    ||||| |||||||| |||||||||||||| |  || ||| ||||||||| ||||| ||||||  |||||||||||    
T  45021535 tttaccagcttataacgttttttgataagctactttaagcagcttatagtttaaaacttatagtttatcattttt 45021461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 185
Target Start/End: Original strand, 3729681 - 3729783
Alignment:
Q  79 tatgactgaaaaagatccgtttggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcgttttttgataagtttattcaagtag 178  Q
    ||||||| ||||| |||| |||||||||||| |||||||||  || || ||  ||| |||||||| ||||||  ||||||  ||||| | ||||||||||    
T  3729681 tatgactaaaaaatatccatttggtaaccgtgattttctca--agattatagtttacttttactaccttataaggttttt--ataagctaattcaagtag 3729776  T
Q  179 cttatag 185  Q
    |||||||    
T  3729777 cttatag 3729783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 97 - 224
Target Start/End: Original strand, 4283077 - 4283205
Alignment:
Q  97 gtttggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcgttttttgataagtttattcaagtagcttatagcttaaagctta 196  Q
    ||||||||||||||||| ||||| |||||| ||  ||||||||||| ||||||| | |||||||||||| | |||||| |||||||||||||||| ||||    
T  4283077 gtttggtaaccgtcattctctcacgagcttatagcttatttttactggcttataccattttttgataagctaattcaaatagcttatagcttaaacctta 4283176  T
Q  197 taacttatcattttt-tctctaaatttta 224  Q
    || ||||| |||||| |||||||||||||    
T  4283177 tagcttatgatttttctctctaaatttta 4283205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 76 - 224
Target Start/End: Complemental strand, 6462515 - 6462367
Alignment:
Q  76 tcatatgactgaaaaagatccgtttggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcgttttttgataagtttattcaag 175  Q
    |||| ||||| ||||||| || |||||||||||| | ||||||   ||||| ||  |||||||||||||||||||| | ||||||||||| | |||||||    
T  6462515 tcatttgactaaaaaagaaccatttggtaaccgttactttctcgcaagcttatagcttatttttactagcttatagtggtttttgataagctaattcaag 6462416  T
Q  176 tagcttatagcttaaagcttataacttatcattttttctctaaatttta 224  Q
    ||||||||| ||||||||||||| ||||||||| ||| ||| |||||||    
T  6462415 tagcttatatcttaaagcttatagcttatcattatttatctcaatttta 6462367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 87 - 211
Target Start/End: Original strand, 17259418 - 17259542
Alignment:
Q  87 aaaaagatccgtttggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcgttttttgataagtttattcaagtagcttatagc 186  Q
    ||||||| ||||||||||||||||  ||||  | ||||||  | ||||| || |||||||||||||||||||| ||||||| |||||||||| |||||||    
T  17259418 aaaaagacccgtttggtaaccgtcgctttcatacgagcttaaagattatattcactagcttatagcgtttttttataagttaattcaagtagattatagc 17259517  T
Q  187 ttaaagcttataacttatcattttt 211  Q
    |||||| ||||||||||||||||||    
T  17259518 ttaaagtttataacttatcattttt 17259542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 79 - 189
Target Start/End: Complemental strand, 41893021 - 41892911
Alignment:
Q  79 tatgactgaaaaagatccgtttggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcgttttttgataagtttattcaagtag 178  Q
    ||||||| |||||||||| |||||| |||||| || |||||  ||||| ||   |||||||||||||||||||||| |||||||||| | ||||||||||    
T  41893021 tatgactaaaaaagatccatttggtcaccgtcgttctctcacaagcttatagtctatttttactagcttatagcgtgttttgataagctaattcaagtag 41892922  T
Q  179 cttatagctta 189  Q
    |||| ||||||    
T  41892921 cttacagctta 41892911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 132 - 189
Target Start/End: Complemental strand, 16870010 - 16869953
Alignment:
Q  132 ttatttttactagcttatagcgttttttgataagtttattcaagtagcttatagctta 189  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  16870010 ttatttttactagcttatagcgttttttgataagctaattcaagtagcttatagctta 16869953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 97 - 189
Target Start/End: Complemental strand, 1621649 - 1621557
Alignment:
Q  97 gtttggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcgttttttgataagtttattcaagtagcttatagctta 189  Q
    |||||||||||||||||| |||| |||||| ||  |||||||||   |||| ||||||||||||||||| | |||||||||||||||||||||    
T  1621649 gtttggtaaccgtcatttcctcaagagcttatagcttatttttatgtgcttttagcgttttttgataagctaattcaagtagcttatagctta 1621557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 132 - 222
Target Start/End: Original strand, 17902656 - 17902746
Alignment:
Q  132 ttatttttactagcttatagcgttttttgataagtttattcaagtagcttatagcttaaagcttataacttatcattttttctctaaattt 222  Q
    |||||||||||||||||| ||||| || |||||  | |||||||| ||||||| ||||||||||||| ||||||| ||||||||| |||||    
T  17902656 ttatttttactagcttattgcgttcttcgataacctgattcaagtggcttataacttaaagcttatagcttatcaatttttctctcaattt 17902746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 67 - 190
Target Start/End: Original strand, 22028655 - 22028778
Alignment:
Q  67 cttatcagttcatatgactgaaaaagatccgtttggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcgttttttgataagt 166  Q
    ||||| || |||| ||||| ||||||| ||||||||||||||||| |||||||  ||||| ||  |||||||||||| |||| || | ||| |||||||     
T  22028655 cttataagctcatttgactaaaaaagacccgtttggtaaccgtcactttctcacaagcttatagcttatttttactaacttacagaggtttctgataagc 22028754  T
Q  167 ttattcaagtagcttatagcttaa 190  Q
    | ||||||| |||||||| |||||    
T  22028755 taattcaagcagcttataacttaa 22028778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 142 - 212
Target Start/End: Complemental strand, 13838926 - 13838856
Alignment:
Q  142 tagcttatagcgttttttgataagtttattcaagtagcttatagcttaaagcttataacttatcatttttt 212  Q
    |||||||||| | |||||||| || | ||||||||||||||||||||||| |||||| |||||||||||||    
T  13838926 tagcttatagtggtttttgattagctaattcaagtagcttatagcttaaaacttatagcttatcatttttt 13838856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 78 - 207
Target Start/End: Original strand, 34639743 - 34639872
Alignment:
Q  78 atatgactgaaaaagatccgtttggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcgttttttgataagtttattcaagta 177  Q
    |||||| | ||||||| | |||| |||||  |||||||||||  ||||| ||| || |||||| ||  ||||||| | |||||||||| | |||||||||    
T  34639743 atatgattaaaaaagacctgtttcgtaacaatcattttctcaccagcttataacttttttttagtatgttatagcatcttttgataagctaattcaagta 34639842  T
Q  178 gcttatagcttaaagcttataacttatcat 207  Q
    |||||||||||||| ||| || ||||||||    
T  34639843 gcttatagcttaaaacttttagcttatcat 34639872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 63 - 195
Target Start/End: Original strand, 32882664 - 32882796
Alignment:
Q  63 atagcttatcagttcatatgactgaaaaagatccgtttggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcgttttttgat 162  Q
    ||||||| | ||||| | ||||| ||| |||  ||||||||||  |||||||||||| |||||| ||  ||||||||   ||||||||  ||||||||||    
T  32882664 atagcttttaagttcttctgactaaaagagactcgtttggtaattgtcattttctcacgagcttatagcttatttttttgagcttataatgttttttgat 32882763  T
Q  163 aagtttattcaagtagcttatagcttaaagctt 195  Q
    ||  | |||||||||||||| |||||| |||||    
T  32882764 aaactaattcaagtagcttaaagcttacagctt 32882796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 189
Target Start/End: Original strand, 2941874 - 2941995
Alignment:
Q  67 cttatcagttcatatgactgaaaaagatccgtttggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcgttttttgataagt 166  Q
    ||||| || |||| ||||| ||||| | |||||||||||||| |||||  ||| |||| | ||  |||||||||||||||||| || ||||||||||||     
T  2941874 cttataagctcatttgactaaaaaacacccgtttggtaaccgccatttg-tcatgagcatatagcttatttttactagcttattgcattttttgataagc 2941972  T
Q  167 ttattcaagtagcttatagctta 189  Q
    | || ||| ||||||| ||||||    
T  2941973 taatccaaatagcttagagctta 2941995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 212
Target Start/End: Original strand, 10350499 - 10350590
Alignment:
Q  123 gcttgtaaattatttttactagcttatagcgttttttgataagtttattcaagtagcttatagcttaaagct---tataacttatcatttttt 212  Q
    |||| ||| |||||||||||| |||||| | |||||| |||| || ||||||||||||||||||||||| ||   |||| |||||||||||||    
T  10350499 gcttataacttatttttactaacttataacatttttt-ataaattaattcaagtagcttatagcttaaaacttactatagcttatcatttttt 10350590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 190
Target Start/End: Complemental strand, 34590294 - 34590201
Alignment:
Q  97 gtttggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcgttttttgataagtttattcaagtagcttatagcttaa 190  Q
    ||||||||| ||||||| || ||  ||||||||  |||||||||| | ||||||||||||||| ||||| | |||  ||||||||| |||||||    
T  34590294 gtttggtaagcgtcattgtcccattagcttgtagcttatttttaccaacttatagcgtttttttataagctaatttgagtagcttaaagcttaa 34590201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 189
Target Start/End: Original strand, 28363411 - 28363503
Alignment:
Q  97 gtttggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcg-ttttttgataagtttattcaagtagcttatagctta 189  Q
    |||||| |||||||| |||||||  ||||| ||  ||||||| ||| |||||||||| |||||| ||||| | | |||||||||||||||||||    
T  28363411 gtttggcaaccgtcactttctcacaagcttatagcttatttt-actggcttatagcgttttttttataagctaactcaagtagcttatagctta 28363503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 159
Target Start/End: Original strand, 5260414 - 5260509
Alignment:
Q  63 atagcttatcagttcatatgactgaaaaagatccgtttggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcgtttttt 159  Q
    ||||||||| ||||||||||||| ||| | |||  ||| || ||| ||| ||||||| ||  ||||| |||||||||||||| ||||| ||||||||    
T  5260414 atagcttataagttcatatgactaaaaca-atcgatttagtgaccttcactttctcacgaatttgtatattatttttactagtttataacgtttttt 5260509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 9004844 - 9004888
Alignment:
Q  143 agcttatagcgttttttgataagtttattcaagtagcttatagct 187  Q
    |||||||| || ||||||||||| | |||||||||||||||||||    
T  9004844 agcttatatcggtttttgataagctaattcaagtagcttatagct 9004888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 30838659 - 30838699
Alignment:
Q  173 aagtagcttatagcttaaagcttataacttatcattttttc 213  Q
    |||||||| |||||||||||||||||  |||||||||||||    
T  30838659 aagtagctcatagcttaaagcttataggttatcattttttc 30838699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 31812082 - 31812126
Alignment:
Q  145 cttatagcgttttttgataagtttattcaagtagcttatagctta 189  Q
    ||||||||| ||||||||||| | |||||||||||| ||||||||    
T  31812082 cttatagcggtttttgataagctaattcaagtagctcatagctta 31812126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 63 - 189
Target Start/End: Original strand, 41470029 - 41470155
Alignment:
Q  63 atagcttatcagttcatatgactgaaaaagatccgtttggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcgttttttgat 162  Q
    ||||||||| || |||||| ||| ||||||| |||||||||||| |||||||||||| |||||| ||| ||| ||||||||||| |||| ||||||| ||    
T  41470029 atagcttataagctcatataactaaaaaagacccgtttggtaactgtcattttctcacgagcttataacttaattttactagctcatagtgtttttttat 41470128  T
Q  163 aagtttattcaagtagcttatagctta 189  Q
    ||| | | |||||||||||||||||||    
T  41470129 aagctaactcaagtagcttatagctta 41470155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 63 - 189
Target Start/End: Original strand, 43408490 - 43408615
Alignment:
Q  63 atagcttatcagttcatatgactgaaaaagatccgtttggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcgttttttgat 162  Q
    ||||||||| |||||||| |||| |||||||  |||||||||||| ||||||||||| |||||| ||| ||||||| ||||| | |||||  ||||||||    
T  43408490 atagcttattagttcatacgactaaaaaagagtcgtttggtaaccatcattttctcatgagcttataacttattttcactagataatagc-atttttgat 43408588  T
Q  163 aagtttattcaagtagcttatagctta 189  Q
    ||| | ||||||||||| |||||||||    
T  43408589 aagctaattcaagtagcatatagctta 43408615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 82 - 190
Target Start/End: Complemental strand, 18892403 - 18892295
Alignment:
Q  82 gactgaaaaagatccgtttggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcgttttttgataagtttattcaagtagctt 181  Q
    |||| ||||||| | |||| ||||||||||||||| || ||||||  || |||| ||||||||||||||||| ||| ||||||| | |||||||||||||    
T  18892403 gactaaaaaagacctgtttcgtaaccgtcattttcacacgagcttccaacttatatttactagcttatagcgctttctgataagctaattcaagtagctt 18892304  T
Q  182 atagcttaa 190  Q
    ||| |||||    
T  18892303 atatcttaa 18892295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 97 - 208
Target Start/End: Complemental strand, 24523927 - 24523816
Alignment:
Q  97 gtttggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcgttttttgataagtttattcaagtagcttatagcttaaagctta 196  Q
    ||||| ||||||||| ||||| |  ||||| ||| ||||||||||||||||| || | ||||||||| | | |||||||||||||||||||||||| |||    
T  24523927 gtttgctaaccgtcactttctaacaagcttataacttatttttactagcttagagaggtttttgatatgctgattcaagtagcttatagcttaaagttta 24523828  T
Q  197 taacttatcatt 208  Q
    ||  ||||||||    
T  24523827 tagtttatcatt 24523816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 67 - 196
Target Start/End: Complemental strand, 32467894 - 32467766
Alignment:
Q  67 cttatcagttcatatgactgaaaaagatccgtttggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcgttttttgataagt 166  Q
    ||||| || |||| ||||| ||||||| | | ||||||||||||| || |||  |||||| ||  ||||||||||||||||||||   |||||||||||     
T  32467894 cttataagctcatttgactaaaaaagacctgattggtaaccgtcacttcctcgtgagcttatagcttatttttactagcttatagtcgtttttgataag- 32467796  T
Q  167 ttattcaagtagcttatagcttaaagctta 196  Q
      ||||||||||||||||||||||||||||    
T  32467795 caattcaagtagcttatagcttaaagctta 32467766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 211
Target Start/End: Complemental strand, 38288994 - 38288864
Alignment:
Q  81 tgactgaaaaagatccgtttggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcgttttttgataagtttattcaagtagct 180  Q
    ||||| ||||| || ||||| |||||  ||||||| ||| |||||| || ||||||||||  |||||||| |  ||| ||||||| | |||||||||| |    
T  38288994 tgactaaaaaaaattcgtttcgtaacaatcattttttcatgagcttatagattatttttataagcttataactgtttgtgataagctaattcaagtagat 38288895  T
Q  181 tatagcttaaagcttataacttatcattttt 211  Q
    ||||  |||||||||||||||||| ||||||    
T  38288894 tataatttaaagcttataacttattattttt 38288864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 142 - 242
Target Start/End: Original strand, 2595230 - 2595330
Alignment:
Q  142 tagcttatagcgttttttgataagtttattcaagtagcttatagcttaaagcttataacttatcattttttctctaaattttatcccatttatcttaatt 241  Q
    |||||||||| ||||||||||||| | ||||||||||| ||||| ||||||||  || |||| |||||||| ||  ||||||| |||| | |||||||||    
T  2595230 tagcttatagtgttttttgataagctaattcaagtagcatatagtttaaagctcgtagcttaccattttttatcacaattttaccccaataatcttaatt 2595329  T
Q  242 g 242  Q
    |    
T  2595330 g 2595330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 63 - 165
Target Start/End: Complemental strand, 14354659 - 14354557
Alignment:
Q  63 atagcttatcagttcatatgactgaaaaagatccgtttggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcgttttttgat 162  Q
    |||| |||| || |||||||||| ||||||| || ||||||||| ||| ||||||   |||||  ||  |||||||||||||||||||||||||||| ||    
T  14354659 atagtttataagctcatatgactaaaaaagacccatttggtaacagtcgttttctgtcgagctaatagtttatttttactagcttatagcgtttttttat 14354560  T
Q  163 aag 165  Q
    |||    
T  14354559 aag 14354557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 189
Target Start/End: Complemental strand, 27316729 - 27316672
Alignment:
Q  132 ttatttttactagcttatagcgttttttgataagtttattcaagtagcttatagctta 189  Q
    ||||||||| ||||||||||| ||||||| |||||| |||||||||| ||||||||||    
T  27316729 ttatttttattagcttatagcattttttggtaagttaattcaagtagtttatagctta 27316672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 189
Target Start/End: Original strand, 29861299 - 29861410
Alignment:
Q  76 tcatatgactgaaaaagatccgtttggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcgttttttgataagtttattcaag 175  Q
    |||||||||| ||||| |  ||||||||||||||||||| |||| |  | | ||  ||||||||||||| | ||||||| |||||||||| | ||| ||     
T  29861299 tcatatgactaaaaaaaa--cgtttggtaaccgtcatttcctcatgctcgtatagcttatttttactagttcatagcgtattttgataagctaattgaat 29861396  T
Q  176 tagcttatagctta 189  Q
    ||||||||||||||    
T  29861397 tagcttatagctta 29861410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 188
Target Start/End: Complemental strand, 8173067 - 8172942
Alignment:
Q  63 atagcttatcagttcatatgactgaaaaagatccgtttggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcgttttttgat 162  Q
    |||| |||| || |||||||||| ||||||| |  ||||||||| |||||||||  | ||||   ||  ||||||||||||| |||||||||||| |||     
T  8173067 atagtttataagctcatatgactaaaaaagaccgatttggtaacagtcattttcggaagagcaaatagtttatttttactagattatagcgttttctgaa 8172968  T
Q  163 aagtttattcaagtagcttatagctt 188  Q
    |||   ||||||||||||||| ||||    
T  8172967 aagccaattcaagtagcttattgctt 8172942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 216
Target Start/End: Complemental strand, 38529865 - 38529761
Alignment:
Q  112 ttttctcaggagcttgtaaattatttttactagcttatagcgttttttgataagtttattcaagtagcttatagcttaaagcttataacttatcattttt 211  Q
    ||||||||  ||||| || ||||||||||||||||||| || |  ||||||||| |  ||||  |||| | ||||||| |||||| |||||||||| |||    
T  38529865 ttttctcacaagcttatagattatttttactagcttattgcttagtttgataagctagttcagttagcatgtagcttacagcttacaacttatcatcttt 38529766  T
Q  212 tctct 216  Q
    |||||    
T  38529765 tctct 38529761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 181
Target Start/End: Original strand, 43129689 - 43129730
Alignment:
Q  140 actagcttatagcgttttttgataagtttattcaagtagctt 181  Q
    |||||||||||||||||||||| |||||  ||||||||||||    
T  43129689 actagcttatagcgttttttgagaagttatttcaagtagctt 43129730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 242
Target Start/End: Complemental strand, 5111670 - 5111611
Alignment:
Q  183 tagcttaaagcttataacttatcattttttctctaaattttatcccat-ttatcttaattg 242  Q
    |||||||||| ||||| |||||||||||||||||  |||||| ||||| ||||||||||||    
T  5111670 tagcttaaagtttatagcttatcattttttctctcgatttta-cccatgttatcttaattg 5111611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 114 - 224
Target Start/End: Original strand, 27679067 - 27679177
Alignment:
Q  114 ttctcaggagcttgtaaattatttttactagcttatagcgttttttgataagtttattcaagtagcttatagcttaaagcttataacttatcattttttc 213  Q
    |||||| |||||| ||  |||||||||||||||||||||||||||| ||||| | ||||||||||||||| |||||||||||||| ||||||||| |||     
T  27679067 ttctcacgagcttatagcttatttttactagcttatagcgttttttaataagctaattcaagtagcttatggcttaaagcttatagcttatcattattta 27679166  T
Q  214 tctaaatttta 224  Q
    ||| |||||||    
T  27679167 tctcaatttta 27679177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 121 - 203
Target Start/End: Original strand, 31062945 - 31063027
Alignment:
Q  121 gagcttgtaaattatttttactagcttatagcgttttttgataagtttattcaagtagcttatagcttaaagcttataactta 203  Q
    |||||| ||| ||||||| |  ||||||||||| ||||||||||| |  ||||||||||||||||||||||  ||||||||||    
T  31062945 gagcttataacttattttcaagagcttatagcggtttttgataagctatttcaagtagcttatagcttaaaatttataactta 31063027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 189
Target Start/End: Complemental strand, 12359923 - 12359866
Alignment:
Q  132 ttatttttactagcttatagcgttttttgataagtttattcaagtagcttatagctta 189  Q
    ||||||||||||||||||| | |||||||||||||| |||||||||| ||||| ||||    
T  12359923 ttatttttactagcttataacattttttgataagttaattcaagtagtttataactta 12359866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 196
Target Start/End: Original strand, 35189319 - 35189380
Alignment:
Q  135 tttttactagcttatagcgttttttgataagtttattcaagtagcttatagcttaaagctta 196  Q
    |||||||||||||||| || ||||||||||| | |||| |||||||||||| ||||||||||    
T  35189319 tttttactagcttataacgatttttgataagctaattcgagtagcttatagattaaagctta 35189380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 85 - 165
Target Start/End: Complemental strand, 38809047 - 38808967
Alignment:
Q  85 tgaaaaagatccgtttggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcgttttttgataag 165  Q
    ||||||||| | |||||||||| |||| |||||||  ||||| ||  ||| |||||||||||||||||||||| |||||||    
T  38809047 tgaaaaagacctgtttggtaactgtcactttctcacaagcttatagcttaattttactagcttatagcgttttatgataag 38808967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 143 - 211
Target Start/End: Complemental strand, 44809917 - 44809849
Alignment:
Q  143 agcttatagcgttttttgataagtttattcaagtagcttatagcttaaagcttataacttatcattttt 211  Q
    ||||||||||| ||| ||||||| | ||||||||||||||| |||||||| ||||| ||||||| ||||    
T  44809917 agcttatagcggtttgtgataagctaattcaagtagcttatggcttaaagtttatagcttatcactttt 44809849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 132 - 184
Target Start/End: Original strand, 44810071 - 44810123
Alignment:
Q  132 ttatttttactagcttatagcgttttttgataagtttattcaagtagcttata 184  Q
    |||||||||||||||| ||||||||||| ||||| | ||||||||||||||||    
T  44810071 ttatttttactagcttttagcgttttttaataagctaattcaagtagcttata 44810123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 122 - 185
Target Start/End: Complemental strand, 44984408 - 44984345
Alignment:
Q  122 agcttgtaaattatttttactagcttatagcgttttttgataagtttattcaagtagcttatag 185  Q
    ||||| ||| ||||||| || |||||||| |||||||||||||| | |||||||||||||||||    
T  44984408 agcttataacttattttcacgagcttataacgttttttgataagctaattcaagtagcttatag 44984345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 211
Target Start/End: Original strand, 35817095 - 35817185
Alignment:
Q  121 gagcttgtaaattatttttactagcttatagcgttttttgataagtttattcaagtagcttatagcttaaagcttataacttatcattttt 211  Q
    |||||| ||| |||||||||| | |||||| |||||||||||||||| | |||| |||| |||  |||||| |||||| ||||| ||||||    
T  35817095 gagcttataacttatttttaccatcttatatcgttttttgataagttaaatcaattagcatatgacttaaaacttatatcttattattttt 35817185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 114 - 209
Target Start/End: Original strand, 40808450 - 40808545
Alignment:
Q  114 ttctcaggagcttgtaaattatttttactagcttatagcgttttttgataagtttattcaagtagcttatagcttaaagcttataacttatcattt 209  Q
    |||||| |||||| ||  ||||| |||||| |||||| | | |||||||||| | |||||| |||||||  |||||||||||||| |||| |||||    
T  40808450 ttctcatgagcttatagcttattcttactaccttatatcttattttgataagctaattcaattagcttactgcttaaagcttatagcttaacattt 40808545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 184
Target Start/End: Original strand, 5330497 - 5330546
Alignment:
Q  135 tttttactagcttatagcgttttttgataagtttattcaagtagcttata 184  Q
    ||||||||| |||||||| |||||||||||| | ||| ||||||||||||    
T  5330497 tttttactaacttatagccttttttgataagctaatttaagtagcttata 5330546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 189
Target Start/End: Original strand, 15804425 - 15804474
Alignment:
Q  140 actagcttatagcgttttttgataagtttattcaagtagcttatagctta 189  Q
    |||||||||  ||| ||||||||||| | |||||||||||||||||||||    
T  15804425 actagcttaccgcgctttttgataagctaattcaagtagcttatagctta 15804474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 183
Target Start/End: Original strand, 15967759 - 15967875
Alignment:
Q  67 cttatcagttcatatgactgaaaaagatccgtttggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcgttttttgataagt 166  Q
    ||||| || |||| ||||| ||||||| |||||||||||  |||| ||||| |  ||||| ||  |||||||||||||| |||| | | ||||||||||     
T  15967759 cttataagctcatttgactaaaaaagacccgtttggtaaatgtcactttcttataagcttatagcttatttttactagcatataacttgttttgataagc 15967858  T
Q  167 ttattcaagtagcttat 183  Q
    | |||||  ||||||||    
T  15967859 taattcacatagcttat 15967875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 197
Target Start/End: Original strand, 40660220 - 40660316
Alignment:
Q  102 gtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagc-gttttttgataagtttattcaagtagcttatagcttaaagcttat 197  Q
    |||| |||||||||  || |||||  ||| ||||||||| |||||||||||  |||||| ||||||| | ||||||||||||||  ||||| |||||    
T  40660220 gtaatcgtcattttaccacgagctcataatttatttttaatagcttatagcattttttttataagttaaatcaagtagcttataatttaaaacttat 40660316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 76 - 188
Target Start/End: Original strand, 39276311 - 39276423
Alignment:
Q  76 tcatatgactgaaaaagatccgtttggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcgttttttgataagtttattcaag 175  Q
    |||||||||| |||| ||  |||||| |||| |||||||||||| |||||| ||| ||||||||||||||||||| |||||||||||||| | |||||||    
T  39276311 tcatatgactaaaaatgactcgtttgataactgtcattttctcacgagcttataacttatttttactagcttataacgttttttgataagctaattcaag 39276410  T
Q  176 tagcttatagctt 188  Q
    ||||||| |||||    
T  39276411 tagcttaaagctt 39276423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 98 - 189
Target Start/End: Original strand, 21501595 - 21501686
Alignment:
Q  98 tttggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcgttttttgataagtttattcaagtagcttatagctta 189  Q
    ||||||||| |||| ||||||| |||||| ||  |||||||||||||| ||||| ||||||||||||| | |||||||||||||||||||||    
T  21501595 tttggtaactgtcactttctcacgagcttatagcttatttttactagcatatagtgttttttgataagctaattcaagtagcttatagctta 21501686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 132 - 189
Target Start/End: Original strand, 3535180 - 3535237
Alignment:
Q  132 ttatttttactagcttatagcgttttttgataagtttattcaagtagcttatagctta 189  Q
    |||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||    
T  3535180 ttatttttactaacttatagcgttttttgataagctaattcaagtagcttatagctta 3535237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 67 - 189
Target Start/End: Complemental strand, 20988944 - 20988821
Alignment:
Q  67 cttatcagttcatatgactgaaaaagatccgtttggtaaccgtcattttctcaggagcttg-taaattatttttactagcttatagcgttttttgataag 165  Q
    ||||| || |||| ||||| |||||||  |||||||||||||||| ||||||| ||||||  ||  |||||||||||  ||  |||| ||||||||||||    
T  20988944 cttataagctcatttgactaaaaaagacacgtttggtaaccgtcactttctcatgagctttatagcttatttttactgactattagcattttttgataag 20988845  T
Q  166 tttattcaagtagcttatagctta 189  Q
     | |||||||||||||||||||||    
T  20988844 ctaattcaagtagcttatagctta 20988821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 87 - 189
Target Start/End: Original strand, 26026645 - 26026747
Alignment:
Q  87 aaaaagatccgtttggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcgttttttgataagtttattcaagtagcttatagc 186  Q
    ||||||||||||||| |||| |||||| |||||  |||||   | ||||||||||||||||||||||| |||||||||  | ||||||| |||||| |||    
T  26026645 aaaaagatccgtttgataactgtcattatctcacaagcttacgacttatttttactagcttatagcgtgttttgataaactaattcaaggagcttagagc 26026744  T
Q  187 tta 189  Q
    |||    
T  26026745 tta 26026747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 55 - 189
Target Start/End: Original strand, 52831390 - 52831524
Alignment:
Q  55 tatagttgatagcttatcagttcatatgactgaaaaagatccgtttggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcgt 154  Q
    ||||||| ||||||||| || |||||||| | ||||| |   |||||||||| ||||||||  || |||||||||  ||||||| |  ||||||||  |     
T  52831390 tatagtttatagcttataagctcatatgattaaaaaaaacttgtttggtaacggtcatttttacacgagcttgtagcttattttcatgagcttataaagg 52831489  T
Q  155 tttttgataagtttattcaagtagcttatagctta 189  Q
    ||||||||||| | |||||||||||||||||||||    
T  52831490 tttttgataagctaattcaagtagcttatagctta 52831524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 189
Target Start/End: Complemental strand, 44555767 - 44555713
Alignment:
Q  135 tttttactagcttatagcgttttttgataagtttattcaagtagcttatagctta 189  Q
    ||||||||||||| ||||||||||||||||| | || ||||||||||||||||||    
T  44555767 tttttactagcttttagcgttttttgataagctaatccaagtagcttatagctta 44555713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 224
Target Start/End: Complemental strand, 17425731 - 17425650
Alignment:
Q  143 agcttatagcgttttttgataagtttattcaagtagcttatagcttaaagcttataacttatcattttttctctaaatttta 224  Q
    ||||||||||| || || ||||| | | ||||||||| |||||||||||||||||||| ||||| ||||| ||| |||||||    
T  17425731 agcttatagcggttattaataagctaactcaagtagcctatagcttaaagcttataacctatcactttttatctcaatttta 17425650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 212
Target Start/End: Complemental strand, 22347477 - 22347419
Alignment:
Q  154 ttttttgataagtttattcaagtagcttatagcttaaagcttataacttatcatttttt 212  Q
    |||||| ||||||| || |||||||||| ||||||||| ||||||||||||||| ||||    
T  22347477 ttttttaataagttaatccaagtagcttgtagcttaaaacttataacttatcatatttt 22347419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 189
Target Start/End: Complemental strand, 24418292 - 24418246
Alignment:
Q  143 agcttatagcgttttttgataagtttattcaagtagcttatagctta 189  Q
    ||||||||||| ||||||||||| | |||||||||||||||||||||    
T  24418292 agcttatagcggtttttgataagctaattcaagtagcttatagctta 24418246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 227
Target Start/End: Original strand, 30070159 - 30070250
Alignment:
Q  135 tttttactagcttatagc-gttttttgataagtttattcaagtagcttatagcttaaagcttataacttatcattttttctctaaattttatcc 227  Q
    |||||||||||||||||| |||||||  |||| | |||||||||||||| |||| |||||||||  ||||||||| ||  ||| ||||||||||    
T  30070159 tttttactagcttatagcagtttttt--taagctaattcaagtagcttaaagctgaaagcttatggcttatcattattgatctcaattttatcc 30070250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 208
Target Start/End: Original strand, 12637603 - 12637668
Alignment:
Q  143 agcttatagcgttttttgataagtttattcaagtagcttatagcttaaagcttataacttatcatt 208  Q
    ||||||| ||| ||||||||||  | |||||||||||| ||||||||||| ||||| |||||||||    
T  12637603 agcttattgcgatttttgataaactaattcaagtagctaatagcttaaagtttataccttatcatt 12637668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 96 - 197
Target Start/End: Complemental strand, 13615316 - 13615215
Alignment:
Q  96 cgtttggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcgttttttgataagtttattcaagtagcttatagcttaaagctt 195  Q
    ||||| ||||| |||||||||||| ||| || ||  |||||||||  |  |||| | |||||| |||||| | ||| |||||||||||||||||||||||    
T  13615316 cgtttagtaactgtcattttctcacgagtttataccttatttttatgatattattgtgtttttcgataagctaatttaagtagcttatagcttaaagctt 13615217  T
Q  196 at 197  Q
    ||    
T  13615216 at 13615215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 98 - 185
Target Start/End: Complemental strand, 26552287 - 26552200
Alignment:
Q  98 tttggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcgttttttgataagtttattcaagtagcttatag 185  Q
    |||||||||| ||| ||||||| |||| | ||  ||||||||||| |||||||| ||||||| ||||  | ||||||||||| |||||    
T  26552287 tttggtaaccatcactttctcacgagcatatagcttatttttactggcttatagagttttttaataacataattcaagtagcctatag 26552200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 98 - 194
Target Start/End: Complemental strand, 31235583 - 31235485
Alignment:
Q  98 tttggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagc--gttttttgataagtttattcaagtagcttatagcttaaagct 194  Q
    |||||||||||||| ||||||| |||||| || ||||| |||| ||||||||| |   |||||| ||||| | ||| || |||||| ||||||||||||    
T  31235583 tttggtaaccgtcactttctcacgagcttatagattatctttattagcttatatcatttttttttataagctaatttaaatagcttttagcttaaagct 31235485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 242
Target Start/End: Complemental strand, 32474882 - 32474831
Alignment:
Q  191 agcttataacttatcattttttctctaaattttatcccatttatcttaattg 242  Q
    |||||||| | ||||||||||||||| |||||||||||  ||||||||||||    
T  32474882 agcttatagcctatcattttttctctcaattttatccctattatcttaattg 32474831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 169 - 212
Target Start/End: Original strand, 41173816 - 41173859
Alignment:
Q  169 attcaagtagcttatagcttaaagcttataacttatcatttttt 212  Q
    |||||||| |||||||||||||||||||||| |||| |||||||    
T  41173816 attcaagttgcttatagcttaaagcttataatttataatttttt 41173859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 189
Target Start/End: Original strand, 37713218 - 37713264
Alignment:
Q  143 agcttatagcgttttttgataagtttattcaagtagcttatagctta 189  Q
    |||||||||||||| | |||||||| |||||| ||||||||||||||    
T  37713218 agcttatagcgtttatcgataagttaattcaaatagcttatagctta 37713264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 184
Target Start/End: Complemental strand, 5646060 - 5646011
Alignment:
Q  135 tttttactagcttatagcgttttttgataagtttattcaagtagcttata 184  Q
    |||||||||||||||| | |||||| ||||| | ||||||||||||||||    
T  5646060 tttttactagcttatatcatttttttataagctgattcaagtagcttata 5646011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 165
Target Start/End: Original strand, 25885889 - 25886023
Alignment:
Q  27 tctgtttggaaagcacaataagctagcatatagttgatagcttatcagttcatatgactgaaaaagatccgtttggtaaccgtcattttctcaggagctt 126  Q
    |||| |||| ||||| ||||||||||| |||| |  ||| ||||| || |||||||||| ||||| ||    || ||||| ||||||||| || ||||||    
T  25885889 tctgcttggcaagcataataagctagcttatactgtataacttataagctcatatgactaaaaaacat----tttgtaactgtcattttcacacgagctt 25885984  T
Q  127 gtaaattatttttactagcttatagcgttttttgataag 165  Q
     ||  || |||||| |||||||| | |||||||||||||    
T  25885985 atagcttgtttttattagcttatcgtgttttttgataag 25886023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 47987129 - 47987084
Alignment:
Q  179 cttatagcttaaagcttataacttatcattttttctctaaatttta 224  Q
    ||||||| ||||| ||||||||||||||||||| |||| |||||||    
T  47987129 cttatagtttaaaacttataacttatcatttttcctctcaatttta 47987084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 286
Target Start/End: Complemental strand, 42617443 - 42617407
Alignment:
Q  250 ttaaatactaactaaacatatcttttttatgtcatta 286  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  42617443 ttaaatactaattaaacatatcttttttatgttatta 42617407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 189
Target Start/End: Complemental strand, 47789554 - 47789510
Alignment:
Q  145 cttatagcgttttttgataagtttattcaagtagcttatagctta 189  Q
    ||||||||| |||| |||||| | |||||||||||||||||||||    
T  47789554 cttatagcggttttcgataagctaattcaagtagcttatagctta 47789510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 206
Target Start/End: Original strand, 52714331 - 52714383
Alignment:
Q  154 ttttttgataagtttattcaagtagcttatagcttaaagcttataacttatca 206  Q
    |||||| ||||||| |||||||||| ||| | |||||| ||||||||||||||    
T  52714331 tttttttataagttaattcaagtagattacaacttaaaacttataacttatca 52714383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 76 - 189
Target Start/End: Complemental strand, 50020 - 49907
Alignment:
Q  76 tcatatgactgaaaaagatccgtttggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcgttttttgataagtttattcaag 175  Q
    |||| ||||| ||||||| |||||||||||| |||| ||||||| |||||| ||  |||||||||  ||||||||||| ||| ||||||| | |||||||    
T  50020 tcatttgactaaaaaagacccgtttggtaacggtcactttctcacgagcttatagcttatttttaagagcttatagcggtttgtgataagctaattcaag 49921  T
Q  176 tagcttatagctta 189  Q
    ||||||||||||||    
T  49920 tagcttatagctta 49907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 66 - 167
Target Start/End: Complemental strand, 12473625 - 12473524
Alignment:
Q  66 gcttatcagttcatatgactgaaaaagatccgtttggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcgttttttgataag 165  Q
    |||||| || |||| ||||| ||||||| ||||||||||||||| ||||||||| |||||| ||  |||||||||||||||| ||||||||||| |||||    
T  12473625 gcttataagctcatttgactaaaaaagacccgtttggtaaccgtaattttctcatgagcttatagcttatttttactagcttgtagcgtttttttataag 12473526  T
Q  166 tt 167  Q
    ||    
T  12473525 tt 12473524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 97 - 224
Target Start/End: Complemental strand, 44235593 - 44235466
Alignment:
Q  97 gtttggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcgttttttgataagtttattcaagtagcttatagcttaaagctta 196  Q
    |||||||||  |||| ||||||| |||||| ||  ||||||| |  ||||||||| ||||||||||||||| ||||||||| | ||||  ||||||||||    
T  44235593 gtttggtaattgtcactttctcaagagcttatagcttattttaatgagcttatagtgttttttgataagttaattcaagtaacatataaattaaagctta 44235494  T
Q  197 taacttatcattttttctctaaatttta 224  Q
    ||||||||| | |||| ||| |||||||    
T  44235493 taacttatcctcttttatctgaatttta 44235466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 136 - 214
Target Start/End: Original strand, 29234675 - 29234753
Alignment:
Q  136 ttttactagcttatagcgttttttgataagtttattcaagtagcttatagcttaaagcttataacttatcattttttct 214  Q
    ||||||||||||||| | | ||| |||||| | |||||| |||||||||||||||| ||||||| ||||||||||||||    
T  29234675 ttttactagcttataacttatttcgataagctaattcaattagcttatagcttaaatcttataatttatcattttttct 29234753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 169 - 224
Target Start/End: Complemental strand, 12473164 - 12473109
Alignment:
Q  169 attcaagtagcttatagcttaaagcttataacttatcattttttctctaaatttta 224  Q
    ||||||||||||||||||||||||||| || ||||||||||||| ||| |||||||    
T  12473164 attcaagtagcttatagcttaaagcttgtagcttatcattttttatctcaatttta 12473109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 133 - 207
Target Start/End: Original strand, 24887920 - 24887994
Alignment:
Q  133 tatttttactagcttatagcgttttttgataagtttattcaagtagcttatagcttaaagcttataacttatcat 207  Q
    |||||||||||| |||| | ||||||| |||||   ||||||||||||||||| ||||| |||||||||||||||    
T  24887920 tatttttactagtttatcgtgttttttaataagcggattcaagtagcttatagtttaaaacttataacttatcat 24887994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 183
Target Start/End: Complemental strand, 7583634 - 7583563
Alignment:
Q  112 ttttctcaggagcttgtaaattatttttactagcttatagcgttttttgataagtttattcaagtagcttat 183  Q
    |||| ||| ||| |||||||||  ||||||||||||| | | ||||||||||| ||||||||||||||||||    
T  7583634 ttttttcaagagtttgtaaattgattttactagcttaaaacattttttgataaatttattcaagtagcttat 7583563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 184
Target Start/End: Original strand, 32727914 - 32727969
Alignment:
Q  129 aaattatttttactagcttatagcgttttttgataagtttattcaagtagcttata 184  Q
    |||||||||||||||| || |||| | ||||||||||||||||||| |||||||||    
T  32727914 aaattatttttactagtttgtagcttattttgataagtttattcaattagcttata 32727969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 189
Target Start/End: Complemental strand, 13438499 - 13438446
Alignment:
Q  136 ttttactagcttatagcgttttttgataagtttattcaagtagcttatagctta 189  Q
    |||||||||| ||||||||||||| ||||| | ||||||||| |||||||||||    
T  13438499 ttttactagcatatagcgtttttttataagataattcaagtaacttatagctta 13438446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 189
Target Start/End: Complemental strand, 28175692 - 28175591
Alignment:
Q  88 aaaagatccgtttggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcgttttttgataagtttattcaagtagcttatagct 187  Q
    |||||| || |||||| || |||||||||| | ||| || ||  |||||||||  |||||||||| || ||||||||| | | |||||||||||||||||    
T  28175692 aaaagacccatttggttactgtcattttctaatgagtttatagcttatttttatgagcttatagctttctttgataagctaactcaagtagcttatagct 28175593  T
Q  188 ta 189  Q
    ||    
T  28175592 ta 28175591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 132 - 183
Target Start/End: Complemental strand, 7571450 - 7571399
Alignment:
Q  132 ttatttttactagcttatagcgttttttgataagtttattcaagtagcttat 183  Q
    ||||| ||||||||||| | | ||||||||||| ||||||||||||||||||    
T  7571450 ttattcttactagcttaaaacattttttgataaatttattcaagtagcttat 7571399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 132 - 183
Target Start/End: Complemental strand, 7577865 - 7577814
Alignment:
Q  132 ttatttttactagcttatagcgttttttgataagtttattcaagtagcttat 183  Q
    ||||| ||||||||||| | | ||||||||||| ||||||||||||||||||    
T  7577865 ttattcttactagcttaaaacattttttgataaatttattcaagtagcttat 7577814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 132 - 183
Target Start/End: Complemental strand, 7580227 - 7580176
Alignment:
Q  132 ttatttttactagcttatagcgttttttgataagtttattcaagtagcttat 183  Q
    ||||| ||||||||||| | | ||||||||||| ||||||||||||||||||    
T  7580227 ttattcttactagcttaaaacattttttgataaatttattcaagtagcttat 7580176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 159 - 210
Target Start/End: Complemental strand, 24432802 - 24432751
Alignment:
Q  159 tgataagtttattcaagtagcttatagcttaaagcttataacttatcatttt 210  Q
    ||||||| | |||||||||||||||| |||||| |||||| |||||||||||    
T  24432802 tgataagctaattcaagtagcttataacttaaaacttatatcttatcatttt 24432751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 181
Target Start/End: Original strand, 44571032 - 44571071
Alignment:
Q  142 tagcttatagcgttttttgataagtttattcaagtagctt 181  Q
    |||||||||||||||||||| ||||| |||||||||||||    
T  44571032 tagcttatagcgttttttgagaagttaattcaagtagctt 44571071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 193
Target Start/End: Complemental strand, 18654799 - 18654693
Alignment:
Q  87 aaaaagatccgtttggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcgttttttgataagtttattcaagtagcttatagc 186  Q
    |||||||| | |||| |||| |||||||||||| ||| || || ||||||||||  |||||||||   ||| ||||||| | |||||||||  ||||||     
T  18654799 aaaaagattcctttgataacggtcattttctcatgagtttatagattatttttatgagcttatagttgtttgtgataagctaattcaagtatattatagt 18654700  T
Q  187 ttaaagc 193  Q
    |||||||    
T  18654699 ttaaagc 18654693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 181
Target Start/End: Original strand, 25696134 - 25696172
Alignment:
Q  143 agcttatagcgttttttgataagtttattcaagtagctt 181  Q
    ||||||||||||||||||| ||||| |||||||||||||    
T  25696134 agcttatagcgttttttgagaagttaattcaagtagctt 25696172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 181
Target Start/End: Complemental strand, 33982321 - 33982275
Alignment:
Q  135 tttttactagcttatagcgttttttgataagtttattcaagtagctt 181  Q
    |||| |||||||||||||||||||||||||| |  ||||||||||||    
T  33982321 ttttcactagcttatagcgttttttgataagctatttcaagtagctt 33982275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 44818821 - 44818878
Alignment:
Q  142 tagcttatagcgttttttgataagtttattcaagtagcttat-agcttaaagcttata 198  Q
    |||||||||||||||||||||||| | ||||||||| ||| | |||||| ||||||||    
T  44818821 tagcttatagcgttttttgataagctaattcaagtaacttttgagcttatagcttata 44818878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 15050841 - 15050897
Alignment:
Q  133 tatttttactagcttatagcgttttttgataagtttattcaagtagcttatagctta 189  Q
    |||||||||| ||||||||||| ||||||| |  | |||||||||||||| ||||||    
T  15050841 tatttttacttgcttatagcgtcttttgatgaactaattcaagtagcttaaagctta 15050897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 8e-21; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 87 - 186
Target Start/End: Complemental strand, 52596377 - 52596278
Alignment:
Q  87 aaaaagatccgtttggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcgttttttgataagtttattcaagtagcttatagc 186  Q
    ||||||| | |||||||||||||||||||||||||| ||  ||  ||||||||||||||||| |||| |||||||| || | ||||||||||||||||||    
T  52596377 aaaaagacctgtttggtaaccgtcattttctcaggaactattagcttatttttactagcttaaagcggtttttgatgagctgattcaagtagcttatagc 52596278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 37 - 150
Target Start/End: Original strand, 2774172 - 2774285
Alignment:
Q  37 aagcacaataagctagcatatagttgatagcttatcagttcatatgactgaaaaagatccgtttggtaaccgtcattttctcaggagcttgtaaattatt 136  Q
    ||||||||||||||||| || | || | ||||||| || |||||||||| |||||||  | ||||||||||||| |||| ||| |||||| ||| |||||    
T  2774172 aagcacaataagctagcttacaatttaaagcttataagctcatatgactaaaaaagactcatttggtaaccgtctttttttcatgagcttataacttatt 2774271  T
Q  137 tttactagcttata 150  Q
    ||||||||||||||    
T  2774272 tttactagcttata 2774285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 135 - 215
Target Start/End: Original strand, 10518245 - 10518325
Alignment:
Q  135 tttttactagcttatagcgttttttgataagtttattcaagtagcttatagcttaaagcttataacttatcattttttctc 215  Q
    |||||| ||||||||| | |||||||||||| | ||| |||||||||||||||||||||||||||||||||| ||| ||||    
T  10518245 tttttattagcttataacattttttgataagctaatttaagtagcttatagcttaaagcttataacttatcactttatctc 10518325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 78 - 197
Target Start/End: Original strand, 1415694 - 1415813
Alignment:
Q  78 atatgactgaaaaagatccgtttggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcgttttttgataagtttattcaagta 177  Q
    |||||||| |||||| |||||||| |||||  |||||  ||| |||||| ||  ||||||||| ||  |||||||||||||||||||| | |||||||||    
T  1415694 atatgactaaaaaagctccgtttgataaccaccatttattcacgagcttatagcttatttttattaatttatagcgttttttgataagctaattcaagta 1415793  T
Q  178 gcttatagcttaaagcttat 197  Q
    |||| |||||| ||||||||    
T  1415794 gcttgtagcttcaagcttat 1415813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 87 - 189
Target Start/End: Complemental strand, 22593750 - 22593647
Alignment:
Q  87 aaaaagatccgtttggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagc-gttttttgataagtttattcaagtagcttatag 185  Q
    ||||||| | ||||||||||||||| ||||||| |||| ||||  |||||||||  |||||||||| |||||| |||||| | |||||||||||||||||    
T  22593750 aaaaagaccagtttggtaaccgtcactttctcacgagcctgtagcttatttttatcagcttatagcagtttttcgataagctaattcaagtagcttatag 22593651  T
Q  186 ctta 189  Q
    ||||    
T  22593650 ctta 22593647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 113 - 196
Target Start/End: Complemental strand, 35926750 - 35926667
Alignment:
Q  113 tttctcaggagcttgtaaattatttttactagcttatagcgttttttgataagtttattcaagtagcttatagcttaaagctta 196  Q
    ||||||| |||||| ||  |||||||||||||||| ||| ||||||||||||| | ||||||||||||||||||||| ||||||    
T  35926750 tttctcacgagcttatagcttatttttactagcttgtagtgttttttgataagctgattcaagtagcttatagcttacagctta 35926667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 224
Target Start/End: Original strand, 42747589 - 42747711
Alignment:
Q  102 gtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcgttttttgataagtttattcaagtagcttatagcttaaagcttataact 201  Q
    ||||| ||||||| ||||  ||||| ||  ||| |||||  ||||||||| ||||||| ||||| | ||||||||| |||||| ||||||||||||| ||    
T  42747589 gtaactgtcatttactcacaagcttatagcttaattttatgagcttatagtgtttttttataagctaattcaagtaacttataacttaaagcttatagct 42747688  T
Q  202 tatcattttttctctaaatttta 224  Q
    ||||| ||||| ||| |||||||    
T  42747689 tatcactttttatctcaatttta 42747711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 140 - 189
Target Start/End: Original strand, 20003997 - 20004046
Alignment:
Q  140 actagcttatagcgttttttgataagtttattcaagtagcttatagctta 189  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||||    
T  20003997 actagcttatagcgttttttgataagctaattcaagtagcttatagctta 20004046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 79 - 186
Target Start/End: Complemental strand, 31117848 - 31117739
Alignment:
Q  79 tatgactgaaaaagatccgtttggtaaccgtcattttctcaggagct--tgtaaattatttttactagcttatagcgttttttgataagtttattcaagt 176  Q
    ||||||||||||||| | |||||||||  ||||||||||||  || |  | ||| ||| |||||  |||||||||| |||||||||||| | ||||||||    
T  31117848 tatgactgaaaaagacctgtttggtaattgtcattttctcacaagttaatataacttaattttatgagcttatagctttttttgataagataattcaagt 31117749  T
Q  177 agcttatagc 186  Q
    ||||||||||    
T  31117748 agcttatagc 31117739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 212
Target Start/End: Complemental strand, 20792006 - 20791949
Alignment:
Q  155 tttttgataagtttattcaagtagcttatagcttaaagcttataacttatcatttttt 212  Q
    ||||||||||| | ||||||||||||||||||||||| |||||||||| ||| |||||    
T  20792006 tttttgataagctaattcaagtagcttatagcttaaatcttataacttgtcacttttt 20791949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 187
Target Start/End: Original strand, 30418373 - 30418471
Alignment:
Q  87 aaaaagatccgtttggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcgttttttgataagtttattcaagtagcttatagc 186  Q
    ||||||| ||||||||||||| |||  ||||||  ||||| ||  |  ||||||||||||| |||||||||| |||||||| || |||||||||||||||    
T  30418373 aaaaagacccgtttggtaaccatcacattctcacaagcttatagct--tttttactagcttgtagcgtttttggataagttaatccaagtagcttatagc 30418470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 198
Target Start/End: Complemental strand, 21516787 - 21516652
Alignment:
Q  63 atagcttatcagttcatatgactgaaaaagatccgtttggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcgttttttgat 162  Q
    ||||||||| || || ||||||| |||||||   |||||||||  |||||||| ||| |||||| ||| ||| ||| |  |||||||||||||||||  |    
T  21516787 atagcttataagctcgtatgactaaaaaagacatgtttggtaattgtcattttttcacgagcttataacttaatttgatgagcttatagcgttttttatt 21516688  T
Q  163 aagtttattcaagtagcttatagcttaaagcttata 198  Q
    |||   | ||||||| |||||||||||||| |||||    
T  21516687 aagcaaaatcaagtatcttatagcttaaagtttata 21516652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 190
Target Start/End: Complemental strand, 28736330 - 28736207
Alignment:
Q  67 cttatcagttcatatgactgaaaaagatccgtttggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcgttttttgataagt 166  Q
    ||||| || |||| ||||| ||||||| | |  |||||||||||||||| |||  |||||  |  |||||||||| | |||||||| ||||| ||||||     
T  28736330 cttataagctcatttgactaaaaaagaccagcctggtaaccgtcattttttcacaagcttacagcttatttttaccaacttatagcatttttagataagc 28736231  T
Q  167 ttattcaagtagcttatagcttaa 190  Q
    | ||||||||||| ||||||||||    
T  28736230 taattcaagtagcgtatagcttaa 28736207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 189
Target Start/End: Original strand, 32359125 - 32359251
Alignment:
Q  63 atagcttatcagttcatatgactgaaaaagatccgtttggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcgttttttgat 162  Q
    ||||||||| || || ||||| | |||||||||||||| | ||| ||||||||  || |||||| ||  ||||||| |  |||||| |||| ||||||||    
T  32359125 atagcttataagctcgtatgattaaaaaagatccgtttcgcaactgtcatttttacacgagcttatagcttattttcatgagcttacagcgatttttgat 32359224  T
Q  163 aagtttattcaagtagcttatagctta 189  Q
    ||| | ||||||||| | |||||||||    
T  32359225 aagctaattcaagtaacctatagctta 32359251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 42330295 - 42330352
Alignment:
Q  142 tagcttatagcgttttttgataagtttattcaagtagcttat-agcttaaagcttata 198  Q
    |||||||||||||||||||| ||||| ||||||||||||| | |||||| ||||||||    
T  42330295 tagcttatagcgttttttgagaagttaattcaagtagcttttgagcttatagcttata 42330352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 211
Target Start/End: Original strand, 2774335 - 2774403
Alignment:
Q  143 agcttatagcgttttttgataagtttattcaagtagcttatagcttaaagcttataacttatcattttt 211  Q
    |||||||||| |||||||  ||| ||| |||||||||||| |||||||| | ||| |||||||||||||    
T  2774335 agcttatagctttttttgtcaagcttactcaagtagcttaaagcttaaaacctatgacttatcattttt 2774403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 228
Target Start/End: Original strand, 7583382 - 7583535
Alignment:
Q  67 cttatcagttcatatgactgaaaaagatccgtttggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcgttttttgataagt 166  Q
    ||||| ||||||||||||| ||||| |    ||| ||||| |||||||||||| |||||| ||  |||||||||  ||||||| | ||| ||||||||||    
T  7583382 cttataagttcatatgactaaaaaaaacatatttcgtaactgtcattttctcacgagcttatagtttatttttatgagcttattgtgttatttgataagt 7583481  T
Q  167 ttattcaagtagcttatagcttaaagcttataacttatcattttttctctaaattttatccc 228  Q
       ||||||||||||        ||||||||||||| ||| ||||| ||| |||||||||||    
T  7583482 aagttcaagtagctt--------aagcttataacttttcactttttatctcaattttatccc 7583535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 250 - 285
Target Start/End: Complemental strand, 3949730 - 3949695
Alignment:
Q  250 ttaaatactaactaaacatatcttttttatgtcatt 285  Q
    ||||||| ||||||||||||||||||||||||||||    
T  3949730 ttaaatattaactaaacatatcttttttatgtcatt 3949695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 155 - 202
Target Start/End: Complemental strand, 7097778 - 7097731
Alignment:
Q  155 tttttgataagtttattcaagtagcttatagcttaaagcttataactt 202  Q
    ||||| ||||| | ||||||||| ||||||||||||||||||||||||    
T  7097778 tttttaataagctaattcaagtatcttatagcttaaagcttataactt 7097731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 178
Target Start/End: Original strand, 35058566 - 35058649
Alignment:
Q  95 ccgtttggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcgttttttgataagtttattcaagtag 178  Q
    |||||||||||| ||||||| |||| |||||| ||  ||||||||||  |||||||||| |||||  |||| | ||||||||||    
T  35058566 ccgtttggtaacagtcatttgctcacgagcttatagcttatttttacgggcttatagcggtttttagtaagctaattcaagtag 35058649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 137 - 224
Target Start/End: Original strand, 38785780 - 38785867
Alignment:
Q  137 tttactagcttatagcgttttttgataagtttattcaagtagcttatagcttaaagcttataacttatcattttttctctaaatttta 224  Q
    |||| ||||||||||| |  ||||||||| | |||||| ||||||||| ||||||| || ||| ||||||||||  |||| |||||||    
T  38785780 tttattagcttatagcataatttgataagctaattcaaatagcttataacttaaagtttgtaatttatcattttgcctctcaatttta 38785867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 187
Target Start/End: Complemental strand, 15942541 - 15942491
Alignment:
Q  137 tttactagcttatagcgttttttgataagtttattcaagtagcttatagct 187  Q
    |||||||| |||| | ||||||||||||| | |||||||||||||||||||    
T  15942541 tttactaggttattgtgttttttgataagctaattcaagtagcttatagct 15942491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 189
Target Start/End: Complemental strand, 38322170 - 38322120
Alignment:
Q  139 tactagcttatagcgttttttgataagtttattcaagtagcttatagctta 189  Q
    ||||||||||| |||||||||||||||    ||||||||||||||||||||    
T  38322170 tactagcttattgcgttttttgataagccacttcaagtagcttatagctta 38322120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 119
Target Start/End: Original strand, 3160450 - 3160506
Alignment:
Q  63 atagcttatcagttcatatgactgaaaaagatccgtttggtaaccgtcattttctca 119  Q
    ||||||| | ||||||||||||  ||||||||| |||||||||  ||||||||||||    
T  3160450 atagcttgtaagttcatatgaccaaaaaagatctgtttggtaattgtcattttctca 3160506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 46315686 - 46315642
Alignment:
Q  143 agcttatagcgttttttgataagtttattcaagtagcttatagct 187  Q
    |||||||| |||||||||||||| |  ||||||||||||||||||    
T  46315686 agcttataacgttttttgataagctatttcaagtagcttatagct 46315642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 63 - 241
Target Start/End: Original strand, 6909539 - 6909717
Alignment:
Q  63 atagcttatcagttcatatgactgaaaaagatccgtttggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcgttttttgat 162  Q
    ||||||||| |||||||| |||| |||||||   ||||||||||| |  |||||| | |||||| ||  |||||||||||||| ||||  ||  ||||||    
T  6909539 atagcttataagttcataagactaaaaaagacttgtttggtaaccattgttttcttaagagcttatagcttatttttactagcctataatgtgatttgat 6909638  T
Q  163 aagtttattcaagtagcttatagcttaaagcttataacttatcattttttctctaaattttatcccatttatcttaatt 241  Q
    ||| | |||||| ||||| |||||||||| |||||| | | ||||||||||||| |||||||| |   |||||||||||    
T  6909639 aagctaattcaaatagctcatagcttaaaacttataccatgtcattttttctctcaattttattcttgttatcttaatt 6909717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 73 - 197
Target Start/End: Complemental strand, 9750070 - 9749947
Alignment:
Q  73 agttcatatgactgaaaaagatccgtttggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcgttttttgataagtttattc 172  Q
    ||||||| ||| | ||||| |||| |||| ||||| ||| ||||||| |||||| ||   |||||| || || |||||||||||||||||||||| ||||    
T  9750070 agttcatttgattaaaaaaaatccttttgctaaccatcactttctcatgagcttatagcctatttt-accagtttatagcgttttttgataagttaattc 9749972  T
Q  173 aagtagcttatagcttaaagcttat 197  Q
    |||||| ||||| |||| |||||||    
T  9749971 aagtaggttataacttatagcttat 9749947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 224
Target Start/End: Original strand, 9750152 - 9750274
Alignment:
Q  100 tggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcgttttttgataagtttattcaagtagcttatagcttaaagcttataa 199  Q
    |||||||||||||||||||| |||| | |   ||||||||||||  | |||| ||||| | ||||||| ||||||||||||| |||| || | ||||||     
T  9750152 tggtaaccgtcattttctcacgagcctatgc-ttatttttactaa-tcatagtgttttctaataagttcattcaagtagcttctagcatagaccttatag 9750249  T
Q  200 cttatcattttttctctaaatttta 224  Q
    |||||||| |||| ||| |||||||    
T  9750250 cttatcatattttatctcaatttta 9750274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 87 - 198
Target Start/End: Original strand, 9195470 - 9195581
Alignment:
Q  87 aaaaagatccgtttggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcgttttttgataagtttattcaagtagcttatagc 186  Q
    ||||||| ||||||| |||| |||  ||||||| || ||| ||  ||| ||||||||||||||||   |||  |||||||| |||| ||||||||| |||    
T  9195470 aaaaagacccgtttgataactgtctctttctcacgatcttatagcttaattttactagcttatagtagtttacgataagttgattcgagtagcttaaagc 9195569  T
Q  187 ttaaagcttata 198  Q
    ||| ||||||||    
T  9195570 ttatagcttata 9195581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 189
Target Start/End: Original strand, 4912375 - 4912429
Alignment:
Q  135 tttttactagcttatagcgttttttgataagtttattcaagtagcttatagctta 189  Q
    |||||||||||||||||| |||||||||||  |  ||||||||||||||| ||||    
T  4912375 tttttactagcttatagcattttttgataaactacttcaagtagcttatatctta 4912429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 227
Target Start/End: Original strand, 2255203 - 2255341
Alignment:
Q  87 aaaaagatccgtttggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcgttttttgataagtttattcaagtagcttatagc 186  Q
    ||||||| | |||||||||| ||||||||||||    ||| ||  ||||| |||||||||| |  |||||| |  |||  | || |||||||||||||||    
T  2255203 aaaaagacctgtttggtaactgtcattttctcacacacttatagcttattattactagcttttcacgttttctattaaactaatccaagtagcttatagc 2255302  T
Q  187 ttaaagcttataacttatcattttttctctaaattttatcc 227  Q
     |||| |||||| |||||||  |||||||| ||||||||||    
T  2255303 ctaaaacttatagcttatca--ttttctctcaattttatcc 2255341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 238
Target Start/End: Complemental strand, 8014584 - 8014527
Alignment:
Q  181 tatagcttaaagcttataacttatcattttttctctaaattttatcccatttatctta 238  Q
    |||||||||||| |||||| |||| ||||||||||| ||||||| |||  ||||||||    
T  8014584 tatagcttaaagtttataatttataattttttctctgaattttacccctattatctta 8014527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 189
Target Start/End: Original strand, 166560 - 166659
Alignment:
Q  88 aaaagatccgtttggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcgttttttgataagtttattcaagtagcttatagct 187  Q
    |||||| | ||||| |||||| || ||  ||| |||||| ||| ||||||||||||||||||||||  |||||||||| | || |||||||| |||||||    
T  166560 aaaagacctgtttgataaccgccacttcgtcacgagcttataacttatttttactagcttatagcg--ttttgataagctaatccaagtagcctatagct 166657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 211
Target Start/End: Original strand, 7933 - 8010
Alignment:
Q  135 tttttactagcttatagc-gttttttgataagtttattcaagtagcttatagcttaaagcttataacttatcattttt 211  Q
    ||||||| |||||||||  ||||||| ||||| | ||||||||||| ||| | ||||| |||||||||||||||||||    
T  7933 tttttaccagcttatagaagtttttttataagctgattcaagtagcatattgtttaaatcttataacttatcattttt 8010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 189
Target Start/End: Complemental strand, 339080 - 339035
Alignment:
Q  143 agcttatagcgttttttgataagtttattcaagtagcttatagctta 189  Q
    |||||||||||||||| |||||| | |||||||||||||||||||||    
T  339080 agcttatagcgttttt-gataagctaattcaagtagcttatagctta 339035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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