View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3063_high_3 (Length: 530)
Name: NF3063_high_3
Description: NF3063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3063_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 172 - 523
Target Start/End: Original strand, 39209354 - 39209701
Alignment:
| Q |
172 |
atcattttgaactgcagttcaccgggcgggaaaaaatttatttatgaatttttgggacaaaattacgttgatacccttatgttgtaaaacatgcatgtac |
271 |
Q |
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| T |
39209354 |
atcatttttaactgcagttcgccgggcgggaaaaatttaatttatgaatttttgggacaaaattacgttggtacccttatgttgtaaaacatgcatgtac |
39209453 |
T |
|
| Q |
272 |
catacattgctcgccatgttggaggatggaaatttcaaacctggtgcatcacgttgtttatgctcagaggtgatgatgataactccacattggacggtgc |
371 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
39209454 |
catacattgctcgcaatgttggaggatggaaatttcaaacctggtgcatcacgttgtttatgctcataggtgatgatgataactccacattggacggtg- |
39209552 |
T |
|
| Q |
372 |
acacacactgcacaagaggtgaccaattgatgcaagcttctcttttcttcctttccttctatacaagagaaacaatcaccaccaacataaaggtgtcttc |
471 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39209553 |
---catactgcacaagaggtgaccaattgatgcaagcttctcttttcttcctttccttctatacaagagaaacaatcaccaccaacataaaggtgtcttc |
39209649 |
T |
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| Q |
472 |
tccctcacactgttttccccttctttatcgtcctttccctcacctccttctc |
523 |
Q |
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| T |
39209650 |
tccctcacactgttttccccttctttatcgtccttcccctcacctccttctc |
39209701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 107 - 523
Target Start/End: Complemental strand, 27514589 - 27514165
Alignment:
| Q |
107 |
tatcataatattataaatggaacacaaacctgcaagtttgccctaatttaatcctttgaaaatccatcattttgaactgcagttcaccgggcgggaaaaa |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||| |
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| T |
27514589 |
tatcataatattataaatggaacacaaacctgcaagtttgccctaatttaatcctttgaaaatccatcattttcaactgcagttaatcgggcgggaaaaa |
27514490 |
T |
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| Q |
207 |
atttatttatgaatttttgggacaaaattacgttgatacccttatgttgtaaaacatgcatgt-accatacattgctcgccatgttggaggatggaaatt |
305 |
Q |
| |
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|| ||| |||| ||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
27514489 |
tttaattaatgagtttttgggacaaaattacgtttatacccttatgttgtaaaacttgcatgtaaccatacattgctcgccatgttggagaatggaaatt |
27514390 |
T |
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| Q |
306 |
tcaaacctggtgcatcacgttgtttatgctcagaggtgatgatgataactccacattggacggtgcacacacactgcacaagagg-tgaccaattgatgc |
404 |
Q |
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| T |
27514389 |
tcaaacctgctgcatcacgttgtttatgctcaggggtcatgatgataactccacattggacggtg----cacactgcacaagaggttgaccaattgctgc |
27514294 |
T |
|
| Q |
405 |
aagcttctcttttcttcctttccttctatacaagagaaacaatcaccaccaacataa----------aggtgtcttctccctcacactgttttccccttc |
494 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
27514293 |
aagcttctcttttcttcctttccttctatacaagagaaacaatcatcaccaacataaatccaaacctaagtgtcttctccctcacactgttttccccttc |
27514194 |
T |
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| Q |
495 |
tttatcgtcctttccctcacctccttctc |
523 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
27514193 |
tttatcgtcctttccctcacctccttctc |
27514165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 124 - 251
Target Start/End: Original strand, 23016965 - 23017092
Alignment:
| Q |
124 |
tggaacacaaacctgcaagtttgccctaatttaatcctttgaaaatccatcattttgaactgcagttcaccgggcgggaaaaaatttatttatgaatttt |
223 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| || ||| |||| |||| |
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| T |
23016965 |
tggaacacaaacctgcaagttttccctaatttaatcctttgaaaatccatcattttcaactgcagttcatcgggcgggaaaaatttaattaatgagtttt |
23017064 |
T |
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| Q |
224 |
tgggacaaaattacgttgatacccttat |
251 |
Q |
| |
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| T |
23017065 |
tgggacaaaattacatttatacccttat |
23017092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 7e-38; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 27637519 - 27637431
Alignment:
| Q |
7 |
gttattacaatagatcatctatgctatgatgattatcaatatgatatttatgagtttaatttagtttcatggtgtttcatttattttgt |
95 |
Q |
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| T |
27637519 |
gttattacaatagctcatctatgctatgatgattatcaatatgatatttatgagtttaatttagtttcatgatgtttcatttattttgt |
27637431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 37353694 - 37353626
Alignment:
| Q |
25 |
ctatgctatgatgattatcaatatgatatttatgagtttaatttagtttcatggtgtttcatttatttt |
93 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||| |
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| T |
37353694 |
ctatactatgatgattatcaatatgatatttatgagtttaatttagtttcatgttgttacttttatttt |
37353626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 37365668 - 37365600
Alignment:
| Q |
25 |
ctatgctatgatgattatcaatatgatatttatgagtttaatttagtttcatggtgtttcatttatttt |
93 |
Q |
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| T |
37365668 |
ctatactatgatgattatcaatatgatatttatgagtttaatttagtttcatgttgttacttttatttt |
37365600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 108 - 167
Target Start/End: Complemental strand, 36407074 - 36407015
Alignment:
| Q |
108 |
atcataatattataaatggaacacaaacctgcaagtttgccctaatttaatcctttgaaa |
167 |
Q |
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|||||||||||||||||||||||| || |||||| ||||||||||||| |||||||||| |
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| T |
36407074 |
atcataatattataaatggaacaccaagctgcaaatttgccctaatttgttcctttgaaa |
36407015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 115 - 167
Target Start/End: Complemental strand, 18449260 - 18449208
Alignment:
| Q |
115 |
tattataaatggaacacaaacctgcaagtttgccctaatttaatcctttgaaa |
167 |
Q |
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||||||||||||||||| || || ||| ||||||||||||| |||||||||| |
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| T |
18449260 |
tattataaatggaacaccaagctccaaatttgccctaatttgctcctttgaaa |
18449208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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