View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3063_high_50 (Length: 226)
Name: NF3063_high_50
Description: NF3063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3063_high_50 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 7 - 226
Target Start/End: Complemental strand, 36152874 - 36152655
Alignment:
| Q |
7 |
catatgaggcttgcatgtcctgaattcattaaagcttgtgatgagatgaacaaaagaatgtaagtgccatttctgaattgtcctttatttggtcttgtgt |
106 |
Q |
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| T |
36152874 |
catatgaggcttgcatgtcctgaattcattaaagcttgtgatgagatgaacaaaagaatgtaagtgccatttctgaattgtcctttatttggtcttgtgt |
36152775 |
T |
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| Q |
107 |
ctctctatggtctatttctgctatatctattacaacttcttttgtagaagaatactaaatatgacctaggaaacaaataaaataattatctacactcatg |
206 |
Q |
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| T |
36152774 |
ctctctatggtctatttctgctatatctattacaacttcttttgtagaagaatactaaatatgacctaggaaacaaataaaataattatctacactcatg |
36152675 |
T |
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| Q |
207 |
tatggtcaagagctcttgct |
226 |
Q |
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| T |
36152674 |
tatggtcaagagctcttgct |
36152655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 8 - 226
Target Start/End: Complemental strand, 36157809 - 36157584
Alignment:
| Q |
8 |
atatgaggcttgcatgtcctgaattcattaaagcttgtgatgagatgaacaaaagaatgtaagtgccatttctgaattgtcctttatttggtcttgtgtc |
107 |
Q |
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|||||||| ||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||| ||||||||||| | ||||| |||| |||| |
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| T |
36157809 |
atatgaggattgcatgtcctgaattcgttaaagcttgcgatgagatgaacaaaataatgtaagtgcctggcctgaattgtccatgatttgatcttttgtc |
36157710 |
T |
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| Q |
108 |
tct-------ctatggtctatttctgctatatctattacaacttcttttgtagaagaatactaaatatgac---ctaggaaacaaataaaataattatct |
197 |
Q |
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| T |
36157709 |
tctctgttgactgtggtttatttctgc--tatctattaaaacttcttttgtagaagaatactgaacaagaccttctaggaaacaaat-aaattattatct |
36157613 |
T |
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| Q |
198 |
acactcatgtatggtcaagagctcttgct |
226 |
Q |
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| T |
36157612 |
acactcatgtatggtcaggagttcttgct |
36157584 |
T |
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