View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3063_high_51 (Length: 226)
Name: NF3063_high_51
Description: NF3063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3063_high_51 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 6 - 226
Target Start/End: Complemental strand, 18219082 - 18218862
Alignment:
| Q |
6 |
acatactgtggtcccaaccccaacctcagcttcctcatctaccacctcagcacccaagcttgtctcaaattccaacactcataacttgtcattgtccata |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18219082 |
acatactgtggtcccaaccccaacctcagcttcctcatctaccacctcagcacccaagcttgtctcaaattccaacactcataacttgtcattgtccata |
18218983 |
T |
|
| Q |
106 |
cctattccatcttctcctgttaagccattagcagagaggcgccctgtgagcacaactactttgacacatgtcactggacccttttcccctcatctttctc |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18218982 |
cctattccatcttctcctgttaagccattagcagagaggcgccctgtgagcacaactactttgacacatgtcactggacccttttcccctcatctttctc |
18218883 |
T |
|
| Q |
206 |
ctccagtagagaccacaaaaa |
226 |
Q |
| |
|
||||| ||||||||||||||| |
|
|
| T |
18218882 |
ctccactagagaccacaaaaa |
18218862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 121 - 226
Target Start/End: Complemental strand, 43010984 - 43010874
Alignment:
| Q |
121 |
cctgttaagccattagcagagaggcgccctgtgagcacaactactttgacacatgtcac-----tggacccttttcccctcatctttctcctccagtaga |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||| |||| |
|
|
| T |
43010984 |
cctgttaagccattagcagagaggcgccctgtgagcacaactactttgacacatgtcatgtcattggacccttttccacttatctttctcctccactaga |
43010885 |
T |
|
| Q |
216 |
gaccacaaaaa |
226 |
Q |
| |
|
||||||||||| |
|
|
| T |
43010884 |
gaccacaaaaa |
43010874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University