View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3063_high_6 (Length: 468)
Name: NF3063_high_6
Description: NF3063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3063_high_6 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-168; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 13 - 337
Target Start/End: Complemental strand, 41459604 - 41459280
Alignment:
| Q |
13 |
aaaattcaaggctcgcaaagaataaagataaattagtcttaagcaagacaactaagctgaatctagaataacatnnnnnnntcagaaaaggagaaacgcg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
41459604 |
aaaattcaaggctcgcaaagaataaagataaattagtcttaagcaagacaactaagctgaatctagaataacataaaaaaatcagaaaaggagaaacgcg |
41459505 |
T |
|
| Q |
113 |
aaacaaaaatatggttcgggaacatgaaccggaaaatacctgaatctacatattcaggagctgcatatccattatttcctactaacgtgttggtgaagat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41459504 |
aaacaaaaatatggttcgggaacatgaaccggaaaatacctgaatctacatattcaggagctgcatatccattatttcctactaacgtgttggtgaagat |
41459405 |
T |
|
| Q |
213 |
gtgacttttgtcacctgttgaaccatcccttgccagcccaaaatcagaaagctttgcattataatcctgcaaccaaatacaggaatatgtatcagacatg |
312 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41459404 |
gtgacttttgtcacctgttggaccatcccttgccagcccaaaatcagaaagctttgcattataatcctgcaaccaaatacaggaatatgtatcagacatg |
41459305 |
T |
|
| Q |
313 |
ttatccaaataatctcttaaattta |
337 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
41459304 |
ttatccaaataatctcttaaattta |
41459280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 337 - 468
Target Start/End: Complemental strand, 41448902 - 41448771
Alignment:
| Q |
337 |
aaagcaaaagactaaaagtctacaattctacatacagaatccaacaagacatttgaagtcttaaaatctccatgtatcactatggcttcactgtgctgaa |
436 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41448902 |
aaagcaaaagactaaaagtctacaattctacatacagaatccaacaagacatttgaagtcttaaaatctccatgtatcactatggcttcactgtgctgaa |
41448803 |
T |
|
| Q |
437 |
atgcaagccctttggcagcaccaagagcaacc |
468 |
Q |
| |
|
| |||||||||||||||||||||||||||||| |
|
|
| T |
41448802 |
acgcaagccctttggcagcaccaagagcaacc |
41448771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 337 - 468
Target Start/End: Complemental strand, 41459251 - 41459117
Alignment:
| Q |
337 |
aaagcaaaagactaaaagtctacaattctacatacagaatccaacaagacatttgaagtcttaaaatctccatgtatcactatggctt---cactgtgct |
433 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| | || |||||||| |
|
|
| T |
41459251 |
aaagcaaaagactaaaagtctacaattctacatacagaatccaacaagacatttgaagtcttaaaatctctatatatcactttattttcagcactgtgca |
41459152 |
T |
|
| Q |
434 |
gaaatgcaagccctttggcagcaccaagagcaacc |
468 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |
|
|
| T |
41459151 |
gaaatgcaagccctttggcagcgtcaagagcaacc |
41459117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 145 - 331
Target Start/End: Complemental strand, 41442679 - 41442496
Alignment:
| Q |
145 |
aaaatacctgaatctacatattcaggagctgcatatccattatttcctactaacgtgttggtgaagatgtgacttttgtcacctgttgaaccatcccttg |
244 |
Q |
| |
|
|||||||||| | ||| ||||||||||||||||||||||| |||| | || | || ||| ||| ||| |||||||||||||||| ||||||| ||| |
|
|
| T |
41442679 |
aaaatacctgtagctagatattcaggagctgcatatccataggttcccattaccctggtgg---agacgtggcttttgtcacctgttggaccatcctttg |
41442583 |
T |
|
| Q |
245 |
ccagcccaaaatcagaaagctttgcattataatcctgcaaccaaatacaggaatatgtatcagacatgttatccaaataatctctta |
331 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| ||||| || ||| | | ||| |||||| ||| |||||||||||| |
|
|
| T |
41442582 |
ccagcccgaaatcagaaagctttgcattataatcctgcaatcaaatcaagaaatgtatttcaaccatgttttccgaataatctctta |
41442496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 349 - 468
Target Start/End: Complemental strand, 41442457 - 41442335
Alignment:
| Q |
349 |
taaaagtctacaattctacatacagaatccaacaagacatttgaagtcttaaaatctccatgtatcact---atggcttcactgtgctgaaatgcaagcc |
445 |
Q |
| |
|
|||||| ||| || ||||||||| ||||||||||||| |||||||||||||||||||| || ||||||| | | ||||||||| |||||||||||| |
|
|
| T |
41442457 |
taaaagactaaaagtctacatacggaatccaacaagatatttgaagtcttaaaatctctatatatcactttattttcatcactgtgcagaaatgcaagcc |
41442358 |
T |
|
| Q |
446 |
ctttggcagcaccaagagcaacc |
468 |
Q |
| |
|
|||||||||| ||||||||||| |
|
|
| T |
41442357 |
ctttggcagcgtcaagagcaacc |
41442335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 41449032 - 41448986
Alignment:
| Q |
203 |
tggtgaagatgtgacttttgtcacctgttgaaccatcccttgccagc |
249 |
Q |
| |
|
||||| ||| ||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
41449032 |
tggtggagacgtgacttttctcacctgttggaccatcccttgccagc |
41448986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 337
Target Start/End: Complemental strand, 41448987 - 41448931
Alignment:
| Q |
281 |
gcaaccaaatacaggaatatgtatcagacatgttatccaaataatctcttaaattta |
337 |
Q |
| |
|
|||||||||| ||| ||||||||||| |||||||| ||||||||||||| ||||| |
|
|
| T |
41448987 |
gcaaccaaatccagaaatatgtatcatacatgttaattaaataatctcttacattta |
41448931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 434 - 468
Target Start/End: Complemental strand, 23832695 - 23832661
Alignment:
| Q |
434 |
gaaatgcaagccctttggcagcaccaagagcaacc |
468 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |
|
|
| T |
23832695 |
gaaatgcaaggcctttggcagcaccaagagcaacc |
23832661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University