View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3063_high_7 (Length: 458)
Name: NF3063_high_7
Description: NF3063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3063_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 406; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 12 - 444
Target Start/End: Complemental strand, 3951483 - 3951048
Alignment:
| Q |
12 |
aggcaattctaagttggtaaaactcataaaagtttactggttaaaatccctccgagctacacgtgtgacgaagttttcaagtcccaattcttgactttaa |
111 |
Q |
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|||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3951483 |
aggcaactctaagttgttaaaactcataaaagtttactggttaaaatccctccgagctacacgtgtgacgaagttttcaagtcccaattcttgactttaa |
3951384 |
T |
|
| Q |
112 |
ggaacaaaatgagtttactctaatttctgcagagtaaatttttagtattattatacaacggtttctgcataaaagtgtgcaggacattgtatatatggaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3951383 |
ggaacaaaatgagtttactctaatttctgcagagtaaatttttagtattattatacaacggtttctgcataaaagtgtgcaggacattatatatatggaa |
3951284 |
T |
|
| Q |
212 |
g---gtcacaaaaaagtttttgtcttactttacagctctaacaatatctacaaatatagaactgaaaactataattacatactgtctcgttgataaatcg |
308 |
Q |
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| T |
3951283 |
gaaggtcacaaaaaagtttttgtcttactttaaagctctaacaatatctacaaatatagaactgaaaactataattacatactgtctcgttgataaatcg |
3951184 |
T |
|
| Q |
309 |
aaaattttcagcattaattcataaccacaaatttgaaattgataagcagagtatttacagcatatattgtttgagaggctccagaaggcaaatatgccat |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3951183 |
aaaattttcagcattaattcataaccacaaatttgaaattgataagcagagtatttacagcatatattgtttgagaggctccagaaggcaaatatgccat |
3951084 |
T |
|
| Q |
409 |
tggattggaacaagtgcactacgaacaatctttctg |
444 |
Q |
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| T |
3951083 |
tggattggaacaagtgcactacgaacaatctttctg |
3951048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 12 - 443
Target Start/End: Original strand, 4027393 - 4027826
Alignment:
| Q |
12 |
aggcaattctaagttggtaaaactcataaaagtttactggttaaaatccctccgagctacacgtgtgacgaagttttcaagtcccaattcttgactttaa |
111 |
Q |
| |
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|||||||||||||||| ||||||||||||||| ||| | || | | |||||| || |||||| || || || |||||||||||||||||||||| |||| |
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| T |
4027393 |
aggcaattctaagttgttaaaactcataaaagcttattagtcatagtccctctgacctacacatgaga--aatttttcaagtcccaattcttgacattaa |
4027490 |
T |
|
| Q |
112 |
ggaacaaaatga--gtttactctaatttctgcagagtaaatttttagtattattatacaacggtttctgcataaaagtgtgcaggacattgtatatatgg |
209 |
Q |
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||| |||||||| |||| ||||||| |||||| | ||| | |||||| |||||||||| | ||||| ||||| ||||||||||||| | ||||| || |
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| T |
4027491 |
ggaccaaaatgatagtttgctctaatatctgcaaattaa-tatttagttctattatacaatgatttctacataa--gtgtgcaggacatagaatataagg |
4027587 |
T |
|
| Q |
210 |
aaggtcacaaaaaagtttttgtcttactttacagctctaacaatatctacaaatatagaact--------gaaaactataattacatactgtctcgttga |
301 |
Q |
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||||||||||||| ||||| ||||||||| ||||||| |||||||||||||||||||| || ||||| || |||||||||||| || |||| |
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| T |
4027588 |
aaggtcacaaaaaggttttggtcttacttcacagctcatacaatatctacaaatatagagctaagaagtaaaaaaccatgattacatactgtttcattga |
4027687 |
T |
|
| Q |
302 |
taaatcgaaaattttcagcattaattcataaccacaaatttgaaattgataagcagagtatttacagcatatattgtttgagaggctccagaaggcaaat |
401 |
Q |
| |
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||||| ||| |||||| || ||||| ||| |||||||| ||| || ||||||||| |||||||||| ||| ||||||| |||| ||| ||||| |
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| T |
4027688 |
aaaatcttaaagtttcaggatcaattcgtaa-cacaaattcgaatttaataagcaga--cattacagcataaattatttgagaagctctggaaaacaaat |
4027784 |
T |
|
| Q |
402 |
atgccattggattggaacaagtgcactacgaacaatctttct |
443 |
Q |
| |
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| T |
4027785 |
acgccattgaattggaacaaatgcactctgaacgatctttct |
4027826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 334 - 426
Target Start/End: Original strand, 4215801 - 4215893
Alignment:
| Q |
334 |
cacaaatttgaaattgataagcagagtatttacagcatatattgtttgagaggctccagaaggcaaatatgccattggattggaacaagtgca |
426 |
Q |
| |
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|||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||| |||||| |||||||||||||| |
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| T |
4215801 |
cacaaattagaaattgataatcagagtatttacagcagatattgtttgagaggctccagaagacaaatatgacattggtttggaacaagtgca |
4215893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 316 - 443
Target Start/End: Original strand, 4005234 - 4005360
Alignment:
| Q |
316 |
tcagcattaattcataaccacaaatttgaaattgataagcagagtatttacagcatatattgtttgagaggctccagaaggcaaatatgccattggattg |
415 |
Q |
| |
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|||||||||||||||||| ||||||| ||| || |||| ||||| | |||||||||||||| |||||| | |||||||| ||||||||||||| | || |
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| T |
4005234 |
tcagcattaattcataac-acaaattcgaatttaataaacagagcaattacagcatatattagttgagaagttccagaagataaatatgccattgaactg |
4005332 |
T |
|
| Q |
416 |
gaacaagtgcactacgaacaatctttct |
443 |
Q |
| |
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||||||||||||| ||||||||||||| |
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| T |
4005333 |
gaacaagtgcactctgaacaatctttct |
4005360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 209 - 271
Target Start/End: Original strand, 4013305 - 4013367
Alignment:
| Q |
209 |
gaaggtcacaaaaaagtttttgtcttactttacagctctaacaatatctacaaatatagaact |
271 |
Q |
| |
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|||||| ||||||| ||||| |||||||| |||||||| ||||||||||||||||||||||| |
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|
| T |
4013305 |
gaaggtaacaaaaatgttttggtcttactctacagctcatacaatatctacaaatatagaact |
4013367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 335 - 443
Target Start/End: Original strand, 4013500 - 4013606
Alignment:
| Q |
335 |
acaaatttgaaattgataagcagagtatttacagcatatattgtttgagaggctccagaaggcaaatatgccattggattggaacaagtgcactacgaac |
434 |
Q |
| |
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||||||| ||||| |||||||||| |||||||||||||| ||||||| ||||| |||| |||||| ||||||| |||||||||| | ||| |||| |
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| T |
4013500 |
acaaattcgaaatcaataagcagaga--ttacagcatatattatttgagaagctccggaagacaaatacgccattgaattggaacaatttcacacggaac |
4013597 |
T |
|
| Q |
435 |
aatctttct |
443 |
Q |
| |
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||||||||| |
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| T |
4013598 |
aatctttct |
4013606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 112
Target Start/End: Original strand, 4013094 - 4013193
Alignment:
| Q |
12 |
aggcaattctaagttggtaaaactcataaaagtttactggttaaaatccctccgagctacacgtgtgacgaagttttcaagtcccaattcttgactttaa |
111 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||| | || | |||| ||| |||||||| ||||| | ||||||||||||||||| ||||||||| |
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|
| T |
4013094 |
aggcaattctaagtcattaaaactcataaaagcttattagtcataatctctcaaagctacacatgtgagcattttttcaagtcccaattc-tgactttaa |
4013192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 6e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 337 - 443
Target Start/End: Original strand, 13400438 - 13400542
Alignment:
| Q |
337 |
aaatttgaaattgataagcagagtatttacagcatatattgtttgagaggctccagaaggcaaatatgccattggattggaacaagtgcactacgaacaa |
436 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| || ||| |||||| |
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| T |
13400438 |
aaatttgaaattgataagcagagtatttacagcatatattgttggagaggctccagaagaaaaatatgccattggattggaacaa--gcgctatgaacaa |
13400535 |
T |
|
| Q |
437 |
tctttct |
443 |
Q |
| |
|
||||||| |
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|
| T |
13400536 |
tctttct |
13400542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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