View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3063_low_10 (Length: 449)
Name: NF3063_low_10
Description: NF3063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3063_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 13 - 419
Target Start/End: Complemental strand, 108910 - 108504
Alignment:
| Q |
13 |
aaaaacatctcaggcccatatcatagaacaccctaatattttagttctttatacgtctcacttatattagtgaagagagaccatagtttgcttataagaa |
112 |
Q |
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| T |
108910 |
aaaaacctctcaggcccatatcatagaacaccctaatattttagttctttatacgtcttacttatattagtgaagagagaccatagtttgcttataagaa |
108811 |
T |
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| Q |
113 |
gagagtattttggcgaggagaacaaccaataagaagacnnnnnnnngtgaaagcaactctcttttttgtcagaactcatagccataaaactgagactgga |
212 |
Q |
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| T |
108810 |
gagagtattttggcgaggagaacaaccaataagaagacaaaaaaaagtgaaagcaactctcttttttgtcagaactcatagccataaaactgagactgga |
108711 |
T |
|
| Q |
213 |
attcgtccaccgttaggtcaaacttaaactttgccaaaagactcgggatatgtaaatcttcgtttgcattagatggatcgtcaaaaacaagtatggaaaa |
312 |
Q |
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| T |
108710 |
attcgtccaccgttaggtcaaacttaaactttgccaaaagactcgggatatgtaaatcttcgtttgcattagatggatcgtcaaaaacaagtatggaaaa |
108611 |
T |
|
| Q |
313 |
agagatatatctcctcacatcttcttgttctcatttattaggctaatttttgggacaatttgtacactgtgtctctcttgtatacttatttgattacaat |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
108610 |
agagatatatctcctcacatcttcttgttctcatttattaggctaatttttgggacaatttgtacactgtgtctctcttgtatacttatttgattacaat |
108511 |
T |
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| Q |
413 |
caagcca |
419 |
Q |
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| T |
108510 |
caagcca |
108504 |
T |
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