View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3063_low_15 (Length: 424)
Name: NF3063_low_15
Description: NF3063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3063_low_15 |
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| [»] scaffold0532 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 16 - 415
Target Start/End: Original strand, 6739668 - 6740067
Alignment:
| Q |
16 |
agctttgatgtgaccacccttcccacaatgatcacaggtgagttttggtccatctcttttctgcctacgtccattgttggaatagaacgctgctccttgc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| || || ||||||||| |
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| T |
6739668 |
agctttgatgtgaccacccttcccacaatgatcacaggtgggttttggtccatctcttttctgcctatgtccattgttggaataaaaggcagctccttgc |
6739767 |
T |
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| Q |
116 |
tctacttttacatttcctttctccctttcggtattgtaacgcgcctcctcccttagaatatgattgagagcacgcctgagtgaaggcagtggatcagagt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
6739768 |
tctacttttacatttcctttctccctttcggtattgtaacgcgcttcctcccttagaatatgattgagagcacgcctgagtgagggcagtggatcagagt |
6739867 |
T |
|
| Q |
216 |
tcaagatggtggtcttgacatgattatattgctcactgtctaaacctcccaggaataggtgaagttgttgatcttcttctcttttcatcaattctttcga |
315 |
Q |
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| T |
6739868 |
tcaagatggtggtcttgacatgattatattgctcactgtctaaacctcccaggaataggtgaagttgttgatcttcttctcttttcatcaattctttcga |
6739967 |
T |
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| Q |
316 |
agctccacatgtgcatgatggaagtggttgaagttcatttaattcataatagaggctcttgaattgagtgtaaaattcggtcacactcaaaccttcatct |
415 |
Q |
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| T |
6739968 |
agctccacatgtgcatgatggcagtggttgaagttcatttaattcatcatagaggctcttgaattgagtgtgaaattcggtcacactcaaaccttcatct |
6740067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 16 - 415
Target Start/End: Original strand, 52081263 - 52081662
Alignment:
| Q |
16 |
agctttgatgtgaccacccttcccacaatgatcacaggtgagttttggtccatctcttttctgcctacgtccattgttggaatagaacgctgctccttgc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| || || ||||||||| |
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| T |
52081263 |
agctttgatgtgaccacccttcccacaatgatcacaggtgggttttggtccatctcttttctgcctatgtccattgttggaataaaaggcagctccttgc |
52081362 |
T |
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| Q |
116 |
tctacttttacatttcctttctccctttcggtattgtaacgcgcctcctcccttagaatatgattgagagcacgcctgagtgaaggcagtggatcagagt |
215 |
Q |
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| T |
52081363 |
tctacttttacatttcctttctccctttcggtattgtaacgcgcatcctcccttagaatatgattgaaagcacgcctgagtgagggcagtggatcagagt |
52081462 |
T |
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| Q |
216 |
tcaagatggtggtcttgacatgattatattgctcactgtctaaacctcccaggaataggtgaagttgttgatcttcttctcttttcatcaattctttcga |
315 |
Q |
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| T |
52081463 |
tcaagatggtggtcttgacatgattatattgctcactgtctaaacctcccaggaataggtgaagttgttgatcttcttctcttttcatcaattctttcga |
52081562 |
T |
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| Q |
316 |
agctccacatgtgcatgatggaagtggttgaagttcatttaattcataatagaggctcttgaattgagtgtaaaattcggtcacactcaaaccttcatct |
415 |
Q |
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| T |
52081563 |
agctccacatgtgcatgatggcagtggttgaagttcatttaattcatcatagaggctcttgaattgagtgtaaaattcggtcacactcaaaccttcatct |
52081662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0532 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0532
Description:
Target: scaffold0532; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 402
Target Start/End: Original strand, 8433 - 8636
Alignment:
| Q |
199 |
aggcagtggatcagagttcaagatggtggtcttgacatgattatattgctcactgtctaaacctcccaggaataggtgaagttgttgatcttcttctctt |
298 |
Q |
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| T |
8433 |
aggcaatggatcagaattaagaatggttgccttaacatgactgtattgttcattgtcaagacttccaagaaagaggtgaagtcgttgttcttcttctctc |
8532 |
T |
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| Q |
299 |
ttcatcaattctttcgaagctccacatgtgcatgatggaagtggttgaagttcatttaattcataatagag-gctcttgaattgagtgtaaaattcggtc |
397 |
Q |
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| T |
8533 |
tgcatcaattcctttgatgcaccacaagtgcattcaggaagtggttggagctcattaagttcatcatagagagct-ttgaacttggtgtaaaattcagtc |
8631 |
T |
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| Q |
398 |
acact |
402 |
Q |
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||||| |
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| T |
8632 |
acact |
8636 |
T |
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