View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3063_low_16 (Length: 402)
Name: NF3063_low_16
Description: NF3063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3063_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 22 - 386
Target Start/End: Complemental strand, 33829121 - 33828757
Alignment:
| Q |
22 |
tgatgagtggaaatgttgaataaagaaagcaagcagtaaggaagaagaatatgaggcatgtttgtgctgcactgcttaatcgtgggagacatccgagtac |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33829121 |
tgatgagtggaaatgttgaataaagaaagcaagcagtacggaagaagaatatgaggcatgtttgtgctgcactgcttaatcgtgggagacatccgagtac |
33829022 |
T |
|
| Q |
122 |
catgtttttgtcatactagagtagagcaaaccgaggttgtcgggtcaaagagtgcgggcaacaaatatttccttccattgacgccattagcattataact |
221 |
Q |
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||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |
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| T |
33829021 |
catgtttttgttatactagagtagaacaaaccgaggttgtcgggtcaaagagtgcgggcaacaaatatttccttccattgatgccattagcgttataact |
33828922 |
T |
|
| Q |
222 |
tgcaccacttgttggatccaccaaaaggttcccagcgtagccagggtaagcccctttaccatacactccagtgcaagccgaagcagcttcaagaggtgct |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33828921 |
tgcaccacttgttggatccaccaaaaggttcccagcgtagccagggtaagctcctttaccatacactccagtgcaagccgaagcagcttcaagaggtgct |
33828822 |
T |
|
| Q |
322 |
tctttgggaccttgatagtacccgtttccaaatgggttcgtcaaggccccagccaacaaactagc |
386 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33828821 |
tctttggggccttgatagtacccgtttccaaatgggttcgtcaaggccccagccaacaaactagc |
33828757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 123 - 386
Target Start/End: Complemental strand, 33821792 - 33821529
Alignment:
| Q |
123 |
atgtttttgtcatactagagtagagcaaaccgaggttgtcgggtcaaagagtgcgggcaacaaatatttccttccattgacgccattagcattataactt |
222 |
Q |
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|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
33821792 |
atgtttttgttatactagagtagaacaaaccgaggttgtcgggtcaaagagtgcgggcaacaaatatttccttccattgacaccattagcgttataactc |
33821693 |
T |
|
| Q |
223 |
gcaccacttgttggatccaccaaaaggttcccagcgtagccagggtaagcccctttaccatacactccagtgcaagccgaagcagcttcaagaggtgctt |
322 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||| |||||||||||||||| |
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| T |
33821692 |
gcaccacttgttggatccaccaagaggttcccagcgtagccagggtaagcccctttaccgaactctccagtacaagccgaagcggcttcaagaggtgctt |
33821593 |
T |
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| Q |
323 |
ctttgggaccttgatagtacccgtttccaaatgggttcgtcaaggccccagccaacaaactagc |
386 |
Q |
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| T |
33821592 |
ctttggggccttgatagtacccatttccaaatgggttcgtcacgaccccagccaataaactagc |
33821529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 359
Target Start/End: Complemental strand, 33811654 - 33811548
Alignment:
| Q |
253 |
ccagcgtagccagggtaagcccctttaccatacactccagtgcaagccgaagcagcttcaagaggtgcttctttgggaccttgatagtacccgtttccaa |
352 |
Q |
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||||| || ||||||||||| ||||| ||||| || |||| ||||| ||||| ||||||||||| ||||| ||||||||| |||| || ||||||| |
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| T |
33811654 |
ccagcataaccagggtaagcacctttgccataaacaccaggacaagctgaagcggcttcaagaggagcttcagaaggaccttgaaagtaaccatttccaa |
33811555 |
T |
|
| Q |
353 |
atgggtt |
359 |
Q |
| |
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| ||||| |
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| T |
33811554 |
aagggtt |
33811548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 33821878 - 33821837
Alignment:
| Q |
29 |
tggaaatgttgaataaagaaagcaagcagtaaggaagaagaa |
70 |
Q |
| |
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|||||||||||||||||| ||||||||||| ||||||| ||| |
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| T |
33821878 |
tggaaatgttgaataaagcaagcaagcagtgaggaagaggaa |
33821837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 142 - 341
Target Start/End: Complemental strand, 27003025 - 27002826
Alignment:
| Q |
142 |
gtagagcaaaccgaggttgtcgggtcaaagagtgcgggcaacaaatatttccttccattgacgccattagcattataacttgcaccacttgttggatcca |
241 |
Q |
| |
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||||| |||||||||||| | ||||||| | || ||||||||||| ||||||||||| | ||||||||||| || || |||||||||||| ||||| |
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| T |
27003025 |
gtagaacaaaccgaggttttagggtcaacaatagcaggcaacaaatacttccttccattatcaccattagcattgtagctagcaccacttgttttatcca |
27002926 |
T |
|
| Q |
242 |
ccaaaaggttcccagcgtagccagggtaagcccctttaccatacactccagtgcaagccgaagcagcttcaagaggtgcttctttgggaccttgatagta |
341 |
Q |
| |
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||||||||| |||||| || ||||| ||||| |||||| |||| || || |||||||||||||||||||| | ||| |||||||| || |||||| |||| |
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| T |
27002925 |
ccaaaaggtccccagcataaccaggataagctcctttagcataaacaccggtgcaagccgaagcagcttccaaaggagcttcttttggtccttgaaagta |
27002826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 178 - 353
Target Start/End: Complemental strand, 26996714 - 26996539
Alignment:
| Q |
178 |
ggcaacaaatatttccttccattgacgccattagcattataacttgcaccacttgttggatccaccaaaaggttcccagcgtagccagggtaagcccctt |
277 |
Q |
| |
|
||||||||||| ||||||||||| | |||||||| || || || |||||||||||| ||||||||||||| |||||| || ||||| ||||| |||| |
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| T |
26996714 |
ggcaacaaatacttccttccattatcaccattagcgttgtagctagcaccacttgttttgtccaccaaaaggtccccagcataaccaggataagctcctt |
26996615 |
T |
|
| Q |
278 |
taccatacactccagtgcaagccgaagcagcttcaagaggtgcttctttgggaccttgatagtacccgtttccaaa |
353 |
Q |
| |
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|| |||| || || |||||||||||||||||||| | ||| |||||||| || |||||| | || ||||| ||||| |
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| T |
26996614 |
tagcataaacaccggtgcaagccgaagcagcttccaaaggagcttcttttggtccttgaaaataaccgttaccaaa |
26996539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 178 - 336
Target Start/End: Complemental strand, 26722270 - 26722112
Alignment:
| Q |
178 |
ggcaacaaatatttccttccattgacgccattagcattataacttgcaccacttgttggatccaccaaaaggttcccagcgtagccagggtaagcccctt |
277 |
Q |
| |
|
||||||||||| ||||||||||| | ||||| |||||||| || |||||||||||| |||| |||||||| |||||| || ||||| ||||| |||| |
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| T |
26722270 |
ggcaacaaatacttccttccattatcaccatttgcattatagctagcaccacttgttttgtccagcaaaaggtccccagcataaccaggataagctcctt |
26722171 |
T |
|
| Q |
278 |
taccatacactccagtgcaagccgaagcagcttcaagaggtgcttctttgggaccttga |
336 |
Q |
| |
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|| |||| || || |||||||||||||||||||| | ||| |||||||| || |||||| |
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|
| T |
26722170 |
tagcataaacaccggtgcaagccgaagcagcttccaaaggagcttctttaggtccttga |
26722112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 178 - 336
Target Start/End: Complemental strand, 26992019 - 26991861
Alignment:
| Q |
178 |
ggcaacaaatatttccttccattgacgccattagcattataacttgcaccacttgttggatccaccaaaaggttcccagcgtagccagggtaagcccctt |
277 |
Q |
| |
|
||||||||||| ||||||||||| | ||||| |||||||| || |||||||||||| |||| |||||||| |||||| || ||||| ||||| |||| |
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| T |
26992019 |
ggcaacaaatacttccttccattatcaccatttgcattatagctagcaccacttgttttgtccagcaaaaggtccccagcataaccaggataagctcctt |
26991920 |
T |
|
| Q |
278 |
taccatacactccagtgcaagccgaagcagcttcaagaggtgcttctttgggaccttga |
336 |
Q |
| |
|
|| |||| || || |||||||||||||||||||| | ||| |||||||| || |||||| |
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| T |
26991919 |
tagcataaacaccggtgcaagccgaagcagcttccaaaggagcttctttaggtccttga |
26991861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 323
Target Start/End: Original strand, 3619507 - 3619577
Alignment:
| Q |
253 |
ccagcgtagccagggtaagcccctttaccatacactccagtgcaagccgaagcagcttcaagaggtgcttc |
323 |
Q |
| |
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||||| || ||||||||||| ||||||||||| || |||| ||| | ||||||||||||||||||||||| |
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|
| T |
3619507 |
ccagcataaccagggtaagcacctttaccataaacaccaggacaaactgaagcagcttcaagaggtgcttc |
3619577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 322
Target Start/End: Original strand, 36936097 - 36936166
Alignment:
| Q |
253 |
ccagcgtagccagggtaagcccctttaccatacactccagtgcaagccgaagcagcttcaagaggtgctt |
322 |
Q |
| |
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||||| || ||||||||||| ||||||||||| || ||| |||| |||||||||||||||||||||| |
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| T |
36936097 |
ccagcataaccagggtaagcacctttaccataaacatcaggacaagttgaagcagcttcaagaggtgctt |
36936166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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