View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3063_low_17 (Length: 401)
Name: NF3063_low_17
Description: NF3063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3063_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 49866614 - 49866264
Alignment:
| Q |
1 |
tgtcatatttgccatttaacttcacctcctattctcaacatgtcatatttgcttactgcatctagtgaacctataatttgctgaacctataatatctcac |
100 |
Q |
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| T |
49866614 |
tgtcatatttgccatttaacttcacctcctattctcaacata-catatttgcttactgcatctagtgaacctataatttgctgaacctataatatctcgc |
49866516 |
T |
|
| Q |
101 |
agcaaccaataatggatttgcttaagctttggtacattg-ctcaagtcatttttgaaaatagtattttctcgtactggtttgaacagttacttattttag |
199 |
Q |
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| T |
49866515 |
agcaaccaataatggatttgcttaagctttggtacattggctcaagtcatttttgaaaatagtattttctcgtactggtttgaacagttacttattttag |
49866416 |
T |
|
| Q |
200 |
gctttctttgagagttttagaatatatgttctattattttaatagaatgtatttgacttgcagtttttgaggatttggtcaagacagtaacatataaagt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
49866415 |
gctttctttgagagttttagaatatatgttctattattttaatagaatgtatttgacttgcagtttttgaggatttggtcaagacactaacatataaagt |
49866316 |
T |
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| Q |
300 |
cagtttatggatatgttttgtatcttacttcatcttttcaaaatgttccctg |
351 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49866315 |
cagtttatggatatgttttgtatcttacttcatcttttcaaaatgttccctg |
49866264 |
T |
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