View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3063_low_19 (Length: 398)

Name: NF3063_low_19
Description: NF3063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3063_low_19
NF3063_low_19
[»] chr1 (10 HSPs)
chr1 (19-392)||(41186160-41186532)
chr1 (236-390)||(47874019-47874173)
chr1 (256-394)||(49287520-49287659)
chr1 (252-394)||(49540295-49540437)
chr1 (293-393)||(37847333-37847433)
chr1 (244-393)||(49440175-49440322)
chr1 (330-394)||(40027298-40027362)
chr1 (355-394)||(40141090-40141129)
chr1 (342-393)||(48179506-48179557)
chr1 (241-319)||(48179622-48179700)
[»] chr5 (2 HSPs)
chr5 (292-351)||(43156057-43156116)
chr5 (292-393)||(31266941-31267044)
[»] chr3 (1 HSPs)
chr3 (356-393)||(14964448-14964485)


Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 19 - 392
Target Start/End: Complemental strand, 41186532 - 41186160
Alignment:
Q  19 gccttgtcttacatatttgatgtttaggggcaaccttcattaggctttagtttttcttcttcttattcctatacaatgcattttctaatatttatctaat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  41186532 gccttgtcttacatatttgatgtttaggggcaaccttcattaggctttagttttttttcttcttattcctatacaatgcattttctaatatttatctaat 41186433  T
Q  119 gaacaaaaatgaaaacagaaaataccaaaagaactcaaactattaatgtccaacacatttaattttgatacggatctaaaatattgtctatactctatac 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  41186432 gaacaaaaatgaaaacagaaaataccaaaagaactcaaactattaatgtccaacacatttaattt-gatacggatctaaaatattgtctatactctatac 41186334  T
Q  219 taatcaatataatcttgtatctcaatacttgtataatattgaaactataaaccatcaaaagttttttctacattagtcaaattattggcaaacaaaaagg 318  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41186333 taatctatataatcttgtatctcaatacttgtataatattgaaactataaaccatcaaaagttttttctacattagtcaaattattggcaaacaaaaagg 41186234  T
Q  319 aaatatgtcaaaacacaaagaccaaaagtaacacaatgtacaatatgcaatttactcaactagagaataatcta 392  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  41186233 aaatatgtcaaaacacaaagatcaaaagtaacacaatgtacaatatgcaagttactcaactagaaaataatcta 41186160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 236 - 390
Target Start/End: Complemental strand, 47874173 - 47874019
Alignment:
Q  236 tatctcaatacttgtataatattgaaactataaaccatcaaaagttttttctacattagtcaaattattggcaaacaaaaaggaaatatgtcaaaacac- 334  Q
    ||||||||||||||| |||||||||||||| ||||||| | |||||||| ||||  ||||| |||| ||||||||||||||||||||| ||  || | |     
T  47874173 tatctcaatacttgtctaatattgaaactacaaaccataacaagtttttcctactctagtccaatt-ttggcaaacaaaaaggaaataggtagaagcgca 47874075  T
Q  335 aaagaccaaaagtaacacaatgtacaatatgcaatttactcaactagagaataatc 390  Q
    |||||||| ||||||||| ||||||||||||||| |||||||||| ||||| ||||    
T  47874074 aaagaccacaagtaacacgatgtacaatatgcaagttactcaactggagaaaaatc 47874019  T

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Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 256 - 394
Target Start/End: Complemental strand, 49287659 - 49287520
Alignment:
Q  256 attgaaactataaaccatca-aaagttttttctacattagtcaaattattggcaaacaaaaaggaaatatgtcaaaacacaaagaccaaaagtaacacaa 354  Q
    |||||||||| |||||||   |||||||||  ||| || ||||||||||||||||||| ||||||||||  || |||||||||||||  |||||||||      
T  49287659 attgaaactacaaaccattgcaaagtttttcttacttttgtcaaattattggcaaacagaaaggaaatagatcgaaacacaaagacccgaagtaacacgg 49287560  T
Q  355 tgtacaatatgcaatttactcaactagagaataatctacc 394  Q
    |||| ||||| ||| | |||||||||| ||||||||||||    
T  49287559 tgtataatatccaagtcactcaactagggaataatctacc 49287520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 252 - 394
Target Start/End: Original strand, 49540295 - 49540437
Alignment:
Q  252 taatattgaaactataaaccatcaaaagttttttctacattagtcaaattattggcaaacaaaaaggaaatatgtcaaaacacaaagaccaaaagtaaca 351  Q
    |||||||||||||| |||||||  ||||||||| || |  | | | ||||||||||||||||||| ||||||   | ||||||||||||||  |||| ||    
T  49540295 taatattgaaactacaaaccattgaaagtttttccttctattgcctaattattggcaaacaaaaatgaaatagaccgaaacacaaagaccacgagtagca 49540394  T
Q  352 caatgtacaatatgcaatttactcaactagagaataatctacc 394  Q
    || |||| ||| ||| | | || ||||||||||||||||||||    
T  49540395 cagtgtataatgtgccagtcacacaactagagaataatctacc 49540437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 293 - 393
Target Start/End: Complemental strand, 37847433 - 37847333
Alignment:
Q  293 agtcaaattattggcaaacaaaaaggaaatatgtcaaaacacaaagaccaaaagtaacacaatgtacaatatgcaatttactcaactagagaataatcta 392  Q
    |||||||||||||||||||||||| |||||   |  |||||||||||||| ||||||| |  |||||| |||  || ||||||||||||| |||||||||    
T  37847433 agtcaaattattggcaaacaaaaatgaaatggatgcaaacacaaagaccacaagtaacgcggtgtacagtatttaagttactcaactagaaaataatcta 37847334  T
Q  393 c 393  Q
    |    
T  37847333 c 37847333  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 244 - 393
Target Start/End: Original strand, 49440175 - 49440322
Alignment:
Q  244 tacttgtataatattgaaactataaaccatcaaaagttttttctacattagtcaaattattggcaaacaaaaaggaaatatgtcaaaacacaaagaccaa 343  Q
    ||||||| ||||||| |||||| ||| |||   |||||||||||||  |  |||||||||| |||||||||||||||||| ||  | ||| ||  | ||     
T  49440175 tacttgtctaatattcaaactacaaatcatggcaagttttttctactatgatcaaattatttgcaaacaaaaaggaaataggttgagacataa--atcat 49440272  T
Q  344 aagtaacacaatgtacaatatgcaatttactcaactagagaataatctac 393  Q
    |||| ||||| ||| |||||||||| ||||| ||| ||||||||||||||    
T  49440273 aagtgacacattgtgcaatatgcaagttactaaaccagagaataatctac 49440322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 330 - 394
Target Start/End: Complemental strand, 40027362 - 40027298
Alignment:
Q  330 aacacaaagaccaaaagtaacacaatgtacaatatgcaatttactcaactagagaataatctacc 394  Q
    ||||||||||| | ||||||||   |||||||||||||| ||||||||| |||||||||||||||    
T  40027362 aacacaaagacaacaagtaacattgtgtacaatatgcaagttactcaacaagagaataatctacc 40027298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 355 - 394
Target Start/End: Complemental strand, 40141129 - 40141090
Alignment:
Q  355 tgtacaatatgcaatttactcaactagagaataatctacc 394  Q
    ||||||| |||||| |||||||||||||||||||||||||    
T  40141129 tgtacaacatgcaagttactcaactagagaataatctacc 40141090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 342 - 393
Target Start/End: Complemental strand, 48179557 - 48179506
Alignment:
Q  342 aaaagtaacacaatgtacaatatgcaatttactcaactagagaataatctac 393  Q
    |||| ||||||  ||||||||| |||| ||||||||||||||||||||||||    
T  48179557 aaaaataacacgttgtacaataagcaagttactcaactagagaataatctac 48179506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 319
Target Start/End: Complemental strand, 48179700 - 48179622
Alignment:
Q  241 caatacttgtataatattgaaactataaaccatcaaaagttttttctacattagtcaaattattggcaaacaaaaagga 319  Q
    |||||||||| ||||||  |||||| |||||||   ||| |||||||||  |||||||||||||||| | |||||||||    
T  48179700 caatacttgtctaatatgtaaactacaaaccattgcaagctttttctactctagtcaaattattggctagcaaaaagga 48179622  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 292 - 351
Target Start/End: Original strand, 43156057 - 43156116
Alignment:
Q  292 tagtcaaattattggcaaacaaaaaggaaatatgtcaaaacacaaagaccaaaagtaaca 351  Q
    |||| ||||||||||||| ||||||||||||| ||||||||||||||| || ||||||||    
T  43156057 tagttaaattattggcaagcaaaaaggaaataggtcaaaacacaaagatcacaagtaaca 43156116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 292 - 393
Target Start/End: Complemental strand, 31267044 - 31266941
Alignment:
Q  292 tagtcaaattattggcaaacaaaaaggaaatatgtcaaaacacaaagaccaaaagtaacacaatgtacaatat--gcaatttactcaactagagaataat 389  Q
    |||||||||| || |||| |||||||||| || ||| ||||||||| |||| ||| | ||   ||||||||||  |||| ||||||||||||||||||||    
T  31267044 tagtcaaattttttgcaagcaaaaaggaactaggtcgaaacacaaacaccacaagaatcattgtgtacaatatatgcaaattactcaactagagaataat 31266945  T
Q  390 ctac 393  Q
    ||||    
T  31266944 ctac 31266941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 393
Target Start/End: Complemental strand, 14964485 - 14964448
Alignment:
Q  356 gtacaatatgcaatttactcaactagagaataatctac 393  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  14964485 gtacaatatgcaaattactcaactagagaataatctac 14964448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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