View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3063_low_20 (Length: 397)
Name: NF3063_low_20
Description: NF3063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3063_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 152; Significance: 2e-80; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 126 - 365
Target Start/End: Original strand, 22495469 - 22495703
Alignment:
| Q |
126 |
catgatttccttaaaaacaggtttgaagttttggaccaaccaataatataacaagaaaaatcgacattcctgcatttcattaaattataattcgtgggat |
225 |
Q |
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| T |
22495469 |
catgattttcttaaaaacagatttgaagttttggacaaaccaataa-----caagaaaaatcgacattcttgcatttcattaaagtgtatttcgtggtat |
22495563 |
T |
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| Q |
226 |
taaagatcaatactcttattataatacatacacgacaattgcattacaatactaagaaaaatcaattagcaattgttggtgttagactagaaatattatt |
325 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || |
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| T |
22495564 |
taaacatcactactcttattataatacatacacgacaattgcattacaatactaagaaaactcagtttgcaattgttggtgttagactagaaatattttt |
22495663 |
T |
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| Q |
326 |
ggggaaagttgaatgtatatcacatatgcaatgtgcacga |
365 |
Q |
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| T |
22495664 |
ggggacagttgaacgtatatcacatatgcaatgtggacga |
22495703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 80 - 249
Target Start/End: Original strand, 22513754 - 22513923
Alignment:
| Q |
80 |
attgttttgtaaggttgcatggatgatagtttttcatccatactctcatgatttccttaaaaacaggtttgaagttttggaccaaccaataatataacaa |
179 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
22513754 |
attgttttgtaaggttgcatgggtgatagtttttcatccatactctcatgatttccttaaaagaagatttgaagttttggaccaaccaataatataacaa |
22513853 |
T |
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| Q |
180 |
gaaaaatcgacattcctgcatttcattaaattataattcgtgggattaaagatcaatactcttattataa |
249 |
Q |
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| T |
22513854 |
gaaaaatcgacattcctgcatttcattaaagtgtaattcgtgggattaaacatcactactcttattataa |
22513923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 242 - 358
Target Start/End: Original strand, 22514973 - 22515089
Alignment:
| Q |
242 |
tattataatacatacacgacaattgcattacaatactaagaaaaatcaattagcaattgttggtgttagactagaaatattattggggaaagttgaatgt |
341 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
22514973 |
tattataaaacatacacgacaattgcattacaatactaagaaaactcaattagcaattgttggtgttagactagaaatattattggggacagttgaatgt |
22515072 |
T |
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| Q |
342 |
atatcacatatgcaatg |
358 |
Q |
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| T |
22515073 |
atgtcacatacgcaatg |
22515089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 97 - 252
Target Start/End: Original strand, 22527921 - 22528075
Alignment:
| Q |
97 |
catggatgatagtttttcatccatactctcatgatttccttaaaaacaggtttgaagttttggaccaaccaataatataacaagaaaaatcgacattcct |
196 |
Q |
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|||||||||||||||| || ||| ||| |||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||| |||| | |
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| T |
22527921 |
catggatgatagtttt-cacccaaacttccatgatttccttaaaaacagatttaaagttttagaccaaccaataatataacaagaaaaatcgagattctt |
22528019 |
T |
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| Q |
197 |
gcatttcattaaattataattcgtgggattaaagatcaatactcttattataatac |
252 |
Q |
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| T |
22528020 |
gcatttcattaaagtgtatttcgtggcattaaaaatcactactcttattacaatac |
22528075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 268 - 351
Target Start/End: Original strand, 22528066 - 22528149
Alignment:
| Q |
268 |
attacaatactaagaaaaatcaattagcaattgttggtgttagactagaaatattattggggaaagttgaatgtatatcacata |
351 |
Q |
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|||||||||||||||||| ||| || |||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
22528066 |
attacaatactaagaaaactcagtttgcaattattggtgttagactagaaatattattggggacagttgaatgtatataacata |
22528149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 126 - 242
Target Start/End: Original strand, 22602575 - 22602691
Alignment:
| Q |
126 |
catgatttccttaaaaacaggtttgaagttttggaccaaccaataatataacaagaaaaatcgacattcctgcatttcattaaattataattcgtgggat |
225 |
Q |
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|||||||| ||||||||||| |||| | |||||||||||||| || |||||||||||||||| |||||| | ||||| |||||| | |||||||||| || |
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| T |
22602575 |
catgattttcttaaaaacagatttggacttttggaccaaccagtagtataacaagaaaaatcaacattcttacattttattaaagtgtaattcgtggcat |
22602674 |
T |
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| Q |
226 |
taaagatcaatactctt |
242 |
Q |
| |
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|||| |||| ||||||| |
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| T |
22602675 |
taaacatcactactctt |
22602691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 272 - 351
Target Start/End: Original strand, 22602699 - 22602778
Alignment:
| Q |
272 |
caatactaagaaaaatcaattagcaattgttggtgttagactagaaatattattggggaaagttgaatgtatatcacata |
351 |
Q |
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|||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
22602699 |
caatactaagaaaactcagattgcaattgttggtgttagactagaaatattattggggacagttgaatgtatataacata |
22602778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 22513632 - 22513684
Alignment:
| Q |
7 |
gagagaagaaagaaaagaggtgtgcatgatagaatctatgaacttgattaata |
59 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22513632 |
gagagaagaaagaaaagaggtgtgcatgatagaatctatgaacttgattaata |
22513684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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