View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3063_low_22 (Length: 378)

Name: NF3063_low_22
Description: NF3063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3063_low_22
NF3063_low_22
[»] chr1 (12 HSPs)
chr1 (15-361)||(3378429-3378775)
chr1 (235-312)||(2948506-2948583)
chr1 (245-308)||(3349307-3349370)
chr1 (235-312)||(3361633-3361710)
chr1 (244-312)||(3340432-3340500)
chr1 (244-312)||(9818948-9819016)
chr1 (197-312)||(4323152-4323270)
chr1 (196-312)||(2010425-2010541)
chr1 (251-312)||(6601797-6601858)
chr1 (62-110)||(3372428-3372476)
chr1 (262-312)||(3372632-3372682)
chr1 (251-312)||(6592545-6592606)
[»] chr5 (1 HSPs)
chr5 (251-312)||(17969792-17969853)
[»] chr4 (1 HSPs)
chr4 (262-315)||(21237477-21237530)
[»] chr2 (3 HSPs)
chr2 (251-312)||(20952929-20952990)
chr2 (245-312)||(20923402-20923469)
chr2 (66-110)||(39273791-39273835)


Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 15 - 361
Target Start/End: Original strand, 3378429 - 3378775
Alignment:
Q  15 gggcataaactcaataatgttttatgtttgtcgtaacattcactctcaaaagatgcagaggtggatagaattagttgcttaccaagtcatctaatatacg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3378429 gggcataaactcaataatgttttatgtttgtcgtaacattcactctcaaaagatgcagaggtggatagaattagttgcttaccaagtcatctaatatacg 3378528  T
Q  115 ggattttcaattacttgaaaattaaggaaatagtacaaacaagtgttttatccagcatggaggaataaatgctacacaaacaccaaatcttatgcttggt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3378529 ggattttcaattacttgaaaattaaggaaatagtacaaacaagtgttttatccagcatggaggaataaatgctacacaaacaccaaatcttatgcttggt 3378628  T
Q  215 agacaatgtgtctctcaagcttcccaaggcccttcggttatcgagagcaagtttttgagaattatcgatcatgtacttttacttcattctgggccaattg 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3378629 agacaatgtgtctctcaagcttcccaaggcccttcggttatcgagagcaagtttttgagaattatcgatcatgtacttttacttcattctgggccaattg 3378728  T
Q  315 aaagtttcatgttcaccgacaatggacaaacactcattcatgtgaat 361  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  3378729 aaagtttcatgttcaccgacaatggacaaacactcattcatgtgaat 3378775  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 235 - 312
Target Start/End: Complemental strand, 2948583 - 2948506
Alignment:
Q  235 ttcccaaggcccttcggttatcgagagcaagtttttgagaattatcgatcatgtacttttacttcattctgggccaat 312  Q
    |||| ||| |||||| ||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  2948583 ttccaaagacccttcagttattgagagcaagtttttgagaattgttgatcatgtacttttacttcattctgggccaat 2948506  T

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Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 3349307 - 3349370
Alignment:
Q  245 ccttcggttatcgagagcaagtttttgagaattatcgatcatgtacttttacttcattctgggc 308  Q
    ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  3349307 ccttcagttattgagagcaagtttttgagaattattgatcatgtacttttacttcattctgggc 3349370  T

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Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 235 - 312
Target Start/End: Original strand, 3361633 - 3361710
Alignment:
Q  235 ttcccaaggcccttcggttatcgagagcaagtttttgagaattatcgatcatgtacttttacttcattctgggccaat 312  Q
    |||||||| ||||||||||||| | | |||||||||||||||| | |||||||||||||||||||||| |||||||||    
T  3361633 ttcccaagacccttcggttatcaataacaagtttttgagaattgttgatcatgtacttttacttcattatgggccaat 3361710  T

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Target: chr1; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 244 - 312
Target Start/End: Original strand, 3340432 - 3340500
Alignment:
Q  244 cccttcggttatcgagagcaagtttttgagaattatcgatcatgtacttttacttcattctgggccaat 312  Q
    |||||| ||||| |||||||||||||| |||||| | ||||||||||||||||||||||||||||||||    
T  3340432 cccttcagttattgagagcaagtttttaagaattgttgatcatgtacttttacttcattctgggccaat 3340500  T

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Target: chr1; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 244 - 312
Target Start/End: Complemental strand, 9819016 - 9818948
Alignment:
Q  244 cccttcggttatcgagagcaagtttttgagaattatcgatcatgtacttttacttcattctgggccaat 312  Q
    |||||||||| | ||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  9819016 cccttcggttgttgagagaaagtttttgagaattattgatcatgtacttttacttcattccgggccaat 9818948  T

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Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 197 - 312
Target Start/End: Complemental strand, 4323270 - 4323152
Alignment:
Q  197 ccaaatcttatgcttggtagacaatgtgtctctc---aagcttcccaaggcccttcggttatcgagagcaagtttttgagaattatcgatcatgtacttt 293  Q
    ||||||||| |||||| |||||||||||| |||    |||||||||||| |||||  ||||| |||  |||||||| || |||  | |||||||||||||    
T  4323270 ccaaatcttgtgcttgatagacaatgtgtgtctgctgaagcttcccaagaccctttagttattgagcccaagttttcgaaaatggttgatcatgtacttt 4323171  T
Q  294 tacttcattctgggccaat 312  Q
    |||||||||||||||||||    
T  4323170 tacttcattctgggccaat 4323152  T

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Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 196 - 312
Target Start/End: Original strand, 2010425 - 2010541
Alignment:
Q  196 accaaatcttatgcttggtagacaatgtgtctctcaagcttcccaaggcccttcggttatcgagagcaagtttttgagaattatcgatcatgtactttta 295  Q
    |||||||||| || ||| || |||||||||||||  | | |||||  ||||||  ||||||||||| ||| |||||  |||||| |||||||||||||||    
T  2010425 accaaatcttgtgtttgataaacaatgtgtctctgcaacatcccatcgccctttagttatcgagagaaagcttttggcaattattgatcatgtactttta 2010524  T
Q  296 cttcattctgggccaat 312  Q
    ||| |||| ||||||||    
T  2010525 ctttattccgggccaat 2010541  T

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Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 312
Target Start/End: Complemental strand, 6601858 - 6601797
Alignment:
Q  251 gttatcgagagcaagtttttgagaattatcgatcatgtacttttacttcattctgggccaat 312  Q
    |||||| |||||||  ||| ||||||||| ||||||||||||||||| ||||||||||||||    
T  6601858 gttatcaagagcaaactttcgagaattattgatcatgtacttttactccattctgggccaat 6601797  T

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Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 62 - 110
Target Start/End: Original strand, 3372428 - 3372476
Alignment:
Q  62 aaaagatgcagaggtggatagaattagttgcttaccaagtcatctaata 110  Q
    ||||||||||||| ||||||||||||||||||||||| ||||| |||||    
T  3372428 aaaagatgcagagctggatagaattagttgcttaccaggtcatgtaata 3372476  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 312
Target Start/End: Original strand, 3372632 - 3372682
Alignment:
Q  262 caagtttttgagaattatcgatcatgtacttttacttcattctgggccaat 312  Q
    |||||||||||||||| | ||||||||||||||||  |||||||| |||||    
T  3372632 caagtttttgagaattgttgatcatgtacttttacaacattctggtccaat 3372682  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 312
Target Start/End: Complemental strand, 6592606 - 6592545
Alignment:
Q  251 gttatcgagagcaagtttttgagaattatcgatcatgtacttttacttcattctgggccaat 312  Q
    |||||| |||||||| |||  |||||||| ||||||||||||||||| | |||||| |||||    
T  6592606 gttatcaagagcaagctttcaagaattattgatcatgtacttttactccgttctggaccaat 6592545  T

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Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 251 - 312
Target Start/End: Original strand, 17969792 - 17969853
Alignment:
Q  251 gttatcgagagcaagtttttgagaattatcgatcatgtacttttacttcattctgggccaat 312  Q
    ||||||||| |||||||||||||||| || ||||||||||||||||||||||| ||||||||    
T  17969792 gttatcgagggcaagtttttgagaatcattgatcatgtacttttacttcattcagggccaat 17969853  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 262 - 315
Target Start/End: Original strand, 21237477 - 21237530
Alignment:
Q  262 caagtttttgagaattatcgatcatgtacttttacttcattctgggccaattga 315  Q
    |||||||||||||||| | |||||||||||| |||||||||||||| |||||||    
T  21237477 caagtttttgagaattgttgatcatgtacttctacttcattctgggtcaattga 21237530  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 312
Target Start/End: Original strand, 20952929 - 20952990
Alignment:
Q  251 gttatcgagagcaagtttttgagaattatcgatcatgtacttttacttcattctgggccaat 312  Q
    ||||| ||||| ||||| |||| |||| | ||||||||||||||||||||||||||||||||    
T  20952929 gttattgagaggaagttattgaaaattgttgatcatgtacttttacttcattctgggccaat 20952990  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 312
Target Start/End: Original strand, 20923402 - 20923469
Alignment:
Q  245 ccttcggttatcgagagcaagtttttgagaattatcgatcatgtacttttacttcattctgggccaat 312  Q
    ||||| |||||||||| ||||||| |||| | | | || |||||||||||||||||||||||||||||    
T  20923402 ccttctgttatcgagaacaagtttgtgaggactgttgaccatgtacttttacttcattctgggccaat 20923469  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 39273791 - 39273835
Alignment:
Q  66 gatgcagaggtggatagaattagttgcttaccaagtcatctaata 110  Q
    ||||||||| ||||||||||||||||||||||  ||||| |||||    
T  39273791 gatgcagagctggatagaattagttgcttaccgggtcatgtaata 39273835  T

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