View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3063_low_23 (Length: 343)

Name: NF3063_low_23
Description: NF3063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3063_low_23
NF3063_low_23
[»] chr3 (10 HSPs)
chr3 (3-179)||(8431509-8431686)
chr3 (5-43)||(43073140-43073178)
chr3 (6-46)||(31525360-31525400)
chr3 (6-43)||(53349401-53349438)
chr3 (6-37)||(28934830-28934861)
chr3 (6-43)||(9358845-9358883)
chr3 (6-43)||(47820897-47820935)
chr3 (13-43)||(55166925-55166955)
chr3 (15-52)||(44656332-44656369)
chr3 (11-43)||(10454279-10454311)
[»] chr1 (7 HSPs)
chr1 (1-121)||(31833817-31833937)
chr1 (77-131)||(19472716-19472770)
chr1 (5-43)||(42442104-42442142)
chr1 (5-43)||(47028931-47028969)
chr1 (14-46)||(12172951-12172983)
chr1 (6-43)||(43268701-43268739)
chr1 (7-43)||(46757306-46757342)
[»] chr2 (3 HSPs)
chr2 (1-49)||(38908663-38908711)
chr2 (7-43)||(41419617-41419653)
chr2 (5-43)||(14732435-14732473)
[»] chr7 (5 HSPs)
chr7 (77-131)||(30655761-30655815)
chr7 (6-43)||(46691944-46691981)
chr7 (6-40)||(41702867-41702901)
chr7 (1-37)||(22197675-22197711)
chr7 (1-37)||(22240110-22240146)
[»] chr8 (4 HSPs)
chr8 (3-37)||(10124866-10124900)
chr8 (6-43)||(5200578-5200615)
chr8 (6-43)||(25829362-25829399)
chr8 (6-43)||(40930924-40930961)
[»] chr6 (5 HSPs)
chr6 (77-131)||(11546685-11546739)
chr6 (6-44)||(6575720-6575758)
chr6 (2-43)||(10246910-10246952)
chr6 (77-131)||(34761080-34761134)
chr6 (6-43)||(15859093-15859132)
[»] chr5 (3 HSPs)
chr5 (3-37)||(2292168-2292202)
chr5 (6-52)||(25539810-25539856)
chr5 (6-43)||(23173070-23173107)
[»] chr4 (2 HSPs)
chr4 (5-42)||(42390869-42390906)
chr4 (6-43)||(32183275-32183314)


Alignment Details
Target: chr3 (Bit Score: 150; Significance: 3e-79; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 3 - 179
Target Start/End: Original strand, 8431509 - 8431686
Alignment:
Q  3 acaaaacaccggctcgaacaaaaaccccttaaaaaccaccctaacactaaggcactaactaccggacacaaaaataa-tgacgcagacatatacaaatga 101  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||| || ||||||||||||||||||||||    
T  8431509 acaaaacaccggctcgaacaaaaaccccttaaaaaccaccccaacactaaggcactaactaccggtcaaaaaaaaaaatgacgcagacatatacaaatga 8431608  T
Q  102 caatccgcaagcatacccctgcatcaacactcataacagccaaaactgcagcaccacaccaaaaagacagcagcaacc 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  8431609 caatccgcaagcatacccctgcatcaacactcataacagccaaaactacagcaccacaccaaaaagacagcagcaacc 8431686  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 43073140 - 43073178
Alignment:
Q  5 aaaacaccggctcgaacaaaaaccccttaaaaaccaccc 43  Q
    |||||||||||||||||||||||||||||||||||||||    
T  43073140 aaaacaccggctcgaacaaaaaccccttaaaaaccaccc 43073178  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 31525400 - 31525360
Alignment:
Q  6 aaacaccggctcgaacaaaaaccccttaaaaaccaccctaa 46  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  31525400 aaacaacggctcgaacaaaaaccccttaaaaaccaccctaa 31525360  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 53349438 - 53349401
Alignment:
Q  6 aaacaccggctcgaacaaaaaccccttaaaaaccaccc 43  Q
    |||||||||||| |||||||||||||||||||||||||    
T  53349438 aaacaccggctcaaacaaaaaccccttaaaaaccaccc 53349401  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 6 - 37
Target Start/End: Original strand, 28934830 - 28934861
Alignment:
Q  6 aaacaccggctcgaacaaaaaccccttaaaaa 37  Q
    ||||||||||||||||||||||||||||||||    
T  28934830 aaacaccggctcgaacaaaaaccccttaaaaa 28934861  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 9358845 - 9358883
Alignment:
Q  6 aaacaccggctcgaacaaaaacccc-ttaaaaaccaccc 43  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  9358845 aaacaccggctcgaacaaaaacccctttaaaaaccaccc 9358883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 47820935 - 47820897
Alignment:
Q  6 aaacaccggctcgaacaaaaacccc-ttaaaaaccaccc 43  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  47820935 aaacaccggctcgaacaaaaacccctttaaaaaccaccc 47820897  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 43
Target Start/End: Original strand, 55166925 - 55166955
Alignment:
Q  13 ggctcgaacaaaaaccccttaaaaaccaccc 43  Q
    |||||||||||||||||||||||||||||||    
T  55166925 ggctcgaacaaaaaccccttaaaaaccaccc 55166955  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 44656332 - 44656369
Alignment:
Q  15 ctcgaacaaaaaccccttaaaaaccaccctaacactaa 52  Q
    |||||||||||| ||||||||||||||||||| |||||    
T  44656332 ctcgaacaaaaatcccttaaaaaccaccctaaaactaa 44656369  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 10454311 - 10454279
Alignment:
Q  11 ccggctcgaacaaaaaccccttaaaaaccaccc 43  Q
    ||||||| |||||||||||||||||||||||||    
T  10454311 ccggctcaaacaaaaaccccttaaaaaccaccc 10454279  T

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Target: chr1 (Bit Score: 93; Significance: 3e-45; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 31833937 - 31833817
Alignment:
Q  1 ccacaaaacaccggctcgaacaaaaaccccttaaaaaccaccctaacactaaggcactaactaccggacacaaaaataatgacgcagacatatacaaatg 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| | ||||||| ||||||||||||||||||||||||    
T  31833937 ccacataacaccggctcgaacaaaaaccccttaaaaaccaccccaacactaaggcacaaactaccagtcacaaaagtaatgacgcagacatatacaaatg 31833838  T
Q  101 acaatccgcaagcatacccct 121  Q
     ||||||||||||||||||||    
T  31833837 gcaatccgcaagcatacccct 31833817  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 131
Target Start/End: Complemental strand, 19472770 - 19472716
Alignment:
Q  77 taatgacgcagacatatacaaatgacaatccgcaagcatacccctgcatcaacac 131  Q
    ||||||||||| ||||||||| |||||  || |||||||||||||||||||||||    
T  19472770 taatgacgcaggcatatacaagtgacagaccacaagcatacccctgcatcaacac 19472716  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 42442104 - 42442142
Alignment:
Q  5 aaaacaccggctcgaacaaaaaccccttaaaaaccaccc 43  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  42442104 aaaacaccgactcgaacaaaaaccccttaaaaaccaccc 42442142  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 47028969 - 47028931
Alignment:
Q  5 aaaacaccggctcgaacaaaaaccccttaaaaaccaccc 43  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  47028969 aaaacaccggctcgaacaaaaaccccttaaaaactaccc 47028931  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 12172983 - 12172951
Alignment:
Q  14 gctcgaacaaaaaccccttaaaaaccaccctaa 46  Q
    |||||||||||||||||||||||||||||||||    
T  12172983 gctcgaacaaaaaccccttaaaaaccaccctaa 12172951  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 43268701 - 43268739
Alignment:
Q  6 aaacaccggctcgaacaaaaacccc-ttaaaaaccaccc 43  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  43268701 aaacaccggctcgaacaaaaacccctttaaaaaccaccc 43268739  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 46757342 - 46757306
Alignment:
Q  7 aacaccggctcgaacaaaaaccccttaaaaaccaccc 43  Q
    |||||| |||||||||||||||| |||||||||||||    
T  46757342 aacaccagctcgaacaaaaaccctttaaaaaccaccc 46757306  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 38908711 - 38908663
Alignment:
Q  1 ccacaaaacaccggctcgaacaaaaaccccttaaaaaccaccctaacac 49  Q
    |||||||||||||| |||||||||||||||||||||||||||| |||||    
T  38908711 ccacaaaacaccggttcgaacaaaaaccccttaaaaaccaccccaacac 38908663  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 41419653 - 41419617
Alignment:
Q  7 aacaccggctcgaacaaaaaccccttaaaaaccaccc 43  Q
    ||||||| |||||||||||||||||||||||||||||    
T  41419653 aacaccgactcgaacaaaaaccccttaaaaaccaccc 41419617  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 14732435 - 14732473
Alignment:
Q  5 aaaacaccggctcgaacaaaaaccccttaaaaaccaccc 43  Q
    |||| ||| ||||||||||||||||||||||||||||||    
T  14732435 aaaataccagctcgaacaaaaaccccttaaaaaccaccc 14732473  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 77 - 131
Target Start/End: Original strand, 30655761 - 30655815
Alignment:
Q  77 taatgacgcagacatatacaaatgacaatccgcaagcatacccctgcatcaacac 131  Q
    ||||||||| | ||||||||||||||||||| ||||||||||||||| |||||||    
T  30655761 taatgacgccggcatatacaaatgacaatccacaagcatacccctgcgtcaacac 30655815  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 46691944 - 46691981
Alignment:
Q  6 aaacaccggctcgaacaaaaaccccttaaaaaccaccc 43  Q
    ||||||||||||||||||||||||||||||||||||||    
T  46691944 aaacaccggctcgaacaaaaaccccttaaaaaccaccc 46691981  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 41702901 - 41702867
Alignment:
Q  6 aaacaccggctcgaacaaaaaccccttaaaaacca 40  Q
    |||||||||||||||||||||||||||||||||||    
T  41702901 aaacaccggctcgaacaaaaaccccttaaaaacca 41702867  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 22197711 - 22197675
Alignment:
Q  1 ccacaaaacaccggctcgaacaaaaaccccttaaaaa 37  Q
    ||||||||||||| |||||||||||||||||||||||    
T  22197711 ccacaaaacaccgtctcgaacaaaaaccccttaaaaa 22197675  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 22240110 - 22240146
Alignment:
Q  1 ccacaaaacaccggctcgaacaaaaaccccttaaaaa 37  Q
    ||||||||||||| |||||||||||||||||||||||    
T  22240110 ccacaaaacaccgtctcgaacaaaaaccccttaaaaa 22240146  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 10124900 - 10124866
Alignment:
Q  3 acaaaacaccggctcgaacaaaaaccccttaaaaa 37  Q
    |||||||||||||||||||||||||||||||||||    
T  10124900 acaaaacaccggctcgaacaaaaaccccttaaaaa 10124866  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 5200578 - 5200615
Alignment:
Q  6 aaacaccggctcgaacaaaaaccccttaaaaaccaccc 43  Q
    |||||||||||||||||||||||||||||||| |||||    
T  5200578 aaacaccggctcgaacaaaaaccccttaaaaatcaccc 5200615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 25829362 - 25829399
Alignment:
Q  6 aaacaccggctcgaacaaaaaccccttaaaaaccaccc 43  Q
    ||||||||||| ||| ||||||||||||||||||||||    
T  25829362 aaacaccggcttgaataaaaaccccttaaaaaccaccc 25829399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 40930924 - 40930961
Alignment:
Q  6 aaacaccggctcgaacaaaaaccccttaaaaaccaccc 43  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  40930924 aaacaacggctcgaacaaaaactccttaaaaaccaccc 40930961  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 131
Target Start/End: Complemental strand, 11546739 - 11546685
Alignment:
Q  77 taatgacgcagacatatacaaatgacaatccgcaagcatacccctgcatcaacac 131  Q
    |||||||||||||||||||| |||||||||| || | |||||||||| |||||||    
T  11546739 taatgacgcagacatatacatatgacaatcctcatgaatacccctgcgtcaacac 11546685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 6575758 - 6575720
Alignment:
Q  6 aaacaccggctcgaacaaaaaccccttaaaaaccaccct 44  Q
    ||||| ||||||||||||||||| |||||||||||||||    
T  6575758 aaacatcggctcgaacaaaaacctcttaaaaaccaccct 6575720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 10246952 - 10246910
Alignment:
Q  2 cacaaaacaccggctcgaacaaaaacccc-ttaaaaaccaccc 43  Q
    |||| |||||||||||||||||||||||| |||||||||||||    
T  10246952 cacacaacaccggctcgaacaaaaacccctttaaaaaccaccc 10246910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 131
Target Start/End: Complemental strand, 34761134 - 34761080
Alignment:
Q  77 taatgacgcagacatatacaaatgacaatccgcaagcatacccctgcatcaacac 131  Q
    ||||||||||| |||||||| |||||||||| || | |||||||||| |||||||    
T  34761134 taatgacgcaggcatatacatatgacaatcctcatgaatacccctgcgtcaacac 34761080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 15859132 - 15859093
Alignment:
Q  6 aaacaccggctcgaacaaaaacccctt--aaaaaccaccc 43  Q
    |||||||||||||||||||||||||||  |||||||||||    
T  15859132 aaacaccggctcgaacaaaaacccctttaaaaaaccaccc 15859093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 2292202 - 2292168
Alignment:
Q  3 acaaaacaccggctcgaacaaaaaccccttaaaaa 37  Q
    |||||||||||||||||||||||||||||||||||    
T  2292202 acaaaacaccggctcgaacaaaaaccccttaaaaa 2292168  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 25539856 - 25539810
Alignment:
Q  6 aaacaccggctcgaacaaaaaccccttaaaaaccaccctaacactaa 52  Q
    ||||| |||||||||||||||||||||||||||||||| || |||||    
T  25539856 aaacatcggctcgaacaaaaaccccttaaaaaccaccccaaaactaa 25539810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 23173070 - 23173107
Alignment:
Q  6 aaacaccggctcgaacaaaaaccccttaaaaaccaccc 43  Q
    |||||||||||||||||||| |||||||||||||||||    
T  23173070 aaacaccggctcgaacaaaacccccttaaaaaccaccc 23173107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 42390869 - 42390906
Alignment:
Q  5 aaaacaccggctcgaacaaaaaccccttaaaaaccacc 42  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  42390869 aaaacaccggctcaaacaaaaaccccttaaaaaccacc 42390906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 32183314 - 32183275
Alignment:
Q  6 aaacaccggctcgaacaaaaacccctt--aaaaaccaccc 43  Q
    |||||||||||||||||||||||||||  |||||||||||    
T  32183314 aaacaccggctcgaacaaaaacccctttaaaaaaccaccc 32183275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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