View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3063_low_25 (Length: 333)

Name: NF3063_low_25
Description: NF3063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3063_low_25
NF3063_low_25
[»] chr1 (2 HSPs)
chr1 (13-315)||(46640122-46640424)
chr1 (13-315)||(46642414-46642716)


Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 13 - 315
Target Start/End: Original strand, 46640122 - 46640424
Alignment:
Q  13 tcatcacaccaatctctaccaccactaaacccaagactcaccaaagcctacatagcactccaagcatggaaacaaacattcacctcagacccaaaaaaca 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46640122 tcatcacaccaatctctaccaccactaaacccaagactcaccaaagcctacatagcactccaagcatggaaacaaacattcacctcagacccaaaaaaca 46640221  T
Q  113 ccaccttaaactggtatggcccaaatgtatgcaactacacaggtatcttttgtgcaccgtcactagatgatccttacatcaataccgttgctggtataga 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46640222 ccaccttaaactggtatggcccaaatgtatgcaactacacaggtatcttttgtgcaccgtcactagatgatccttacatcaataccgttgctggtataga 46640321  T
Q  213 cataaaccatgcaaacatagcaggttcattaccagaagaacttggtcttttaatagacttagctcttttccacataaactcaaaccgtttctatggttca 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  46640322 cataaaccatgcaaacatagcaggttcattaccagaagaacttggtcttttaacagacatagctcttttccacataaactcaaaccgtttctatggttca 46640421  T
Q  313 ctc 315  Q
    |||    
T  46640422 ctc 46640424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 13 - 315
Target Start/End: Original strand, 46642414 - 46642716
Alignment:
Q  13 tcatcacaccaatctctaccaccactaaacccaagactcaccaaagcctacatagcactccaagcatggaaacaaacattcacctcagacccaaaaaaca 112  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46642414 tcatcacaccaatctctaccaccactaaatccaagactcaccaaagcctacatagcactccaagcatggaaacaaacattcacctcagacccaaaaaaca 46642513  T
Q  113 ccaccttaaactggtatggcccaaatgtatgcaactacacaggtatcttttgtgcaccgtcactagatgatccttacatcaataccgttgctggtataga 212  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46642514 ccactttaaactggtatggcccaaatgtatgcaactacacaggtatcatttgtgcaccgtcactagatgatccttacatcaataccgttgctggtataga 46642613  T
Q  213 cataaaccatgcaaacatagcaggttcattaccagaagaacttggtcttttaatagacttagctcttttccacataaactcaaaccgtttctatggttca 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  46642614 cataaaccatgcaaacatagcaggttcattaccagaagaacttggtcttttaacagacatagctcttttccacataaactcaaaccgtttctatggttca 46642713  T
Q  313 ctc 315  Q
    |||    
T  46642714 ctc 46642716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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