View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3063_low_26 (Length: 316)
Name: NF3063_low_26
Description: NF3063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3063_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 15 - 299
Target Start/End: Complemental strand, 38316245 - 38315964
Alignment:
| Q |
15 |
cacaattcaattataatattatttaatgccttatttcattttattatcaacatcttagact----acagagtcgtaatctcaacatccatgaagttat-a |
109 |
Q |
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| T |
38316245 |
cacaattcaattataatattatttaatgccttatttcattttattatcaacatcttagactatagatagagtcgtaatctcaacatcgatgaagttataa |
38316146 |
T |
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| Q |
110 |
aaacaaaaaatataaaagatataattattgggtcctagtaaaaatttaaatggcaactcgtgttataacaataaggcatattgcatagagtttttgctag |
209 |
Q |
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| T |
38316145 |
aaacaaaaaatataaaagatataattattggatcctagtaaaaatttaaatggcaacacgtgt--------taaggcatattgcatagagtttttgctag |
38316054 |
T |
|
| Q |
210 |
tgcaataactcactcctccttgcatggcgtttgtcatttgtgtacactattgggtgtgatactcatatcataaggcggctccaacttaac |
299 |
Q |
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| T |
38316053 |
tgcaagaactcactcctccttgcatggcgtttgtcatttgtgtacactcttgggtgagatactcatatcataaggtggctccaacctaac |
38315964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 14 - 243
Target Start/End: Complemental strand, 2472676 - 2472444
Alignment:
| Q |
14 |
acacaattcaattataatattatttaatgccttatttcattttattatcaacatcttagactacagagtcgtaatctcaacatccatgaagttataaaac |
113 |
Q |
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| T |
2472676 |
acacaattcaattataatattatttagtgcctaatttcattttattatcaacatctctgaatgtagagtcatacttttaacatccatgaagttataaaac |
2472577 |
T |
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| Q |
114 |
aaaaaatataaaagatataattattgggtcctagt--aaaaatttaaatggcaactcgtgttataacaataaggcatattgcataga-gtttttgctagt |
210 |
Q |
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| T |
2472576 |
gaaaaatataaaagatacaattattggatgctagtaaaaaaaattaaatggcaacacgcggtacaacaataaggtatgttgcatagatttttttgctagt |
2472477 |
T |
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| Q |
211 |
gcaataactcactcctccttgcatggcgtttgt |
243 |
Q |
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| T |
2472476 |
gcaaggactcactcctccttgcatggcgtttgt |
2472444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 14 - 243
Target Start/End: Original strand, 4734395 - 4734626
Alignment:
| Q |
14 |
acacaattcaattataatattatttaatgccttatttcattttattatcaacatcttagactacagagtcgtaatctcaacatccatgaagttataaaac |
113 |
Q |
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| T |
4734395 |
acacaattcagttataatattatttagtgcctaatttcattttattatcaacatctttgagtgtagagtcatagtttcaacatccatgaagttgtaaaaa |
4734494 |
T |
|
| Q |
114 |
-aaaaaatataaaagatataattattgggtcctagtaaaaat-ttaaatggcaactcgtgttataacaataaggcatattgcatagagtttttgctagtg |
211 |
Q |
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| T |
4734495 |
gaaaaaaaataaaagatacaattattggatgctactaaaaagattaaatggcaactcacggtataactataaggtatgttgcatagattttttgctagtg |
4734594 |
T |
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| Q |
212 |
caataactcactcctccttgcatggcgtttgt |
243 |
Q |
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| T |
4734595 |
caagaactcactcctccttgcatggcgtttgt |
4734626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 122 - 243
Target Start/End: Original strand, 38359410 - 38359531
Alignment:
| Q |
122 |
taaaagatataattattgggtcctagtaaaaatttaaatggcaactcgtgttataacaataaggcatattgcatagagtttttgctagtgcaataactca |
221 |
Q |
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||||||||| ||||||||| | |||||||||| ||||||||||||||| | | |||||| |||| |||||||||||| ||||||||||||||| |||||| |
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| T |
38359410 |
taaaagatacaattattggatgctagtaaaaaattaaatggcaactcgcgatgtaacaacaaggtatattgcatagattttttgctagtgcaagaactca |
38359509 |
T |
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| Q |
222 |
ctcctccttgcatggcgtttgt |
243 |
Q |
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|||||||||||| | ||||||| |
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| T |
38359510 |
ctcctccttgcacgacgtttgt |
38359531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 21319974 - 21319919
Alignment:
| Q |
23 |
aattataatattatttaatgccttatttcattttattatcaacatcttagactaca |
78 |
Q |
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|||||||||||| |||| ||||||| |||||||||||| ||||||| |||| |||| |
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| T |
21319974 |
aattataatattctttattgccttaattcattttattaccaacatcatagaataca |
21319919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 1905261 - 1905217
Alignment:
| Q |
34 |
tatttaatgccttatttcattttattatcaacatcttagactaca |
78 |
Q |
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| T |
1905261 |
tatttaatgccttatttcattttattgccatcatcttagagtaca |
1905217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 7235850 - 7235794
Alignment:
| Q |
27 |
ataatattatttaatgccttatttcattttattatcaacatcttagactacagagtc |
83 |
Q |
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|||||||||||| |||||||||| |||| ||||||| ||||||||| |||| |||| |
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| T |
7235850 |
ataatattatttgctgccttattttatttcattatcatcatcttagagtacaaagtc |
7235794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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