View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3063_low_27 (Length: 313)
Name: NF3063_low_27
Description: NF3063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3063_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 29199222 - 29199458
Alignment:
| Q |
1 |
aataaataatgttagaagatccacataatacaaataattctaacgtgaaacgactgttatttagagacggtgggactattttgatataattttgtgacga |
100 |
Q |
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| T |
29199222 |
aataaataatgttagaagatccacataatataaataattctaacgtgaaacgactgttatttagagacggtgggactattttgatataattttgtgacga |
29199321 |
T |
|
| Q |
101 |
aagaaagttgatgtatttcattccataattaaatagaggaataaacacaatacacaatgcacttgtttcgcgggaaggacgattaacaaactatcttctc |
200 |
Q |
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| T |
29199322 |
aagaaagttgatgtatttcattccataattaaatagaggaataaacacaatacacaatgcacttgtttcgcgggaaggacgattaacaaactatcttctc |
29199421 |
T |
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| Q |
201 |
cttccatccttccataactgaaaatcaaatcccgctt |
237 |
Q |
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| T |
29199422 |
cttccatccttccataactgaaaatcaaatcccgctt |
29199458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 146; Significance: 6e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 80 - 237
Target Start/End: Complemental strand, 12652603 - 12652447
Alignment:
| Q |
80 |
tttgatataattttgtgacgaaagaaagttgatgtatttcattccataattaaatagaggaataaacacaatacacaatgcacttgtttcgcgggaagga |
179 |
Q |
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||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12652603 |
tttgatataattt-gtgacaaaagaaagttgatgtatttcattccataattaaatagaggaataaacacaatacacaatgcacttgtttcgcgggaagga |
12652505 |
T |
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| Q |
180 |
cgattaacaaactatcttctccttccatccttccataactgaaaatcaaatcccgctt |
237 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12652504 |
cgattaacaaactatcttctccttccatccttccataactgaaaatcaaatcccgctt |
12652447 |
T |
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