View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3063_low_34 (Length: 266)
Name: NF3063_low_34
Description: NF3063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3063_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 33374871 - 33375126
Alignment:
| Q |
1 |
ttctcacaagcctttctcttccttaaacaataaacataaaaaagtaataataatagtgaaatcagaatagtgcatcctagacatataccaatggaaatta |
100 |
Q |
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| T |
33374871 |
ttctcacaagcctttctcttccttaaacaataaacataaaaaagtaataataatagtgaaatcagaatagtgcatcctagacatataccaatggaaatta |
33374970 |
T |
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| Q |
101 |
taatagaaaaatgattgcttctctttctttcacttgaagaatagtatgattgagaaagagctggtaagtttttcacaggaataaaaactggaaggttgat |
200 |
Q |
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| T |
33374971 |
taatagaaaaatgattgattctctttctttcacttgaagaatagtatgattgagaaagagctggtaagtttttcacaggaataaaaactggaaggttgat |
33375070 |
T |
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| Q |
201 |
tgcaacagtgaagttttgaccaaagttgtttgtatttgctgtgattatgtcctttg |
256 |
Q |
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| T |
33375071 |
tgcaacagtgaagttttgaccaaagttgtttgtatttgctgtgattatgtcctttg |
33375126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 33389462 - 33389698
Alignment:
| Q |
1 |
ttctcacaagcctttctcttccttaaacaataaacataaaaaagtaataataatagtgaaatcagaatagtgcatcctagacatataccaatggaaatta |
100 |
Q |
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| T |
33389462 |
ttctcataagcctttcttttcctcaaacaatagacaaaaaccagaaatagtgatagtgaaatcagaatagcgcgtcctagactcgtactaatggaaatga |
33389561 |
T |
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| Q |
101 |
taatagaaaaatgatt-gcttctctttctttcacttgaagaatagtatgattgagaaagagctggtaagtttttcacaggaataaaaactggaaggttga |
199 |
Q |
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| T |
33389562 |
taatgtgaaaatgatttgcttctctttctttcaattgatgaata---tgattaagaaagagatggtaagtttttcactgggataaaaactgaaaagttgg |
33389658 |
T |
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| Q |
200 |
ttgcaacagtgaagttttgaccaaagttgtttgtatttgc |
239 |
Q |
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| T |
33389659 |
ttgcagcaatgaagttttgaccaaagtactttgcatttgc |
33389698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 145 - 251
Target Start/End: Original strand, 33382232 - 33382338
Alignment:
| Q |
145 |
tatgattgagaaagagctggtaagtttttcacaggaataaaaactggaaggttgattgcaacagtgaagttttgaccaaagttgtttgtatttgctgtga |
244 |
Q |
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||||||| |||||||| | ||||||||||||| || ||||||||||||| |||| ||||| |||||||||||||||||||||| ||| |||||| ||| |
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| T |
33382232 |
tatgattaagaaagagatagtaagtttttcactgggataaaaactggaaagttggttgcagcagtgaagttttgaccaaagttctttccatttgcagtgg |
33382331 |
T |
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| Q |
245 |
ttatgtc |
251 |
Q |
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| T |
33382332 |
ttatgtc |
33382338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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