View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3063_low_37 (Length: 255)

Name: NF3063_low_37
Description: NF3063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3063_low_37
NF3063_low_37
[»] chr4 (17 HSPs)
chr4 (1-252)||(48872665-48872917)
chr4 (1-252)||(48877969-48878221)
chr4 (8-252)||(48865615-48865858)
chr4 (7-169)||(45346718-45346886)
chr4 (54-228)||(48856168-48856345)
chr4 (1-252)||(48842598-48842857)
chr4 (1-117)||(45364060-45364178)
chr4 (1-117)||(45375300-45375418)
chr4 (1-117)||(45382879-45382997)
chr4 (29-169)||(45342243-45342390)
chr4 (173-252)||(45354032-45354111)
chr4 (173-252)||(45356593-45356672)
chr4 (173-252)||(45363511-45363590)
chr4 (173-252)||(45370334-45370413)
chr4 (173-252)||(45382330-45382409)
chr4 (58-127)||(45342165-45342236)
chr4 (137-232)||(48900010-48900106)
[»] chr3 (3 HSPs)
chr3 (7-127)||(11014016-11014137)
chr3 (7-117)||(11023339-11023450)
chr3 (7-74)||(11004575-11004643)


Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 48872665 - 48872917
Alignment:
Q  1 ttagatatataatataaaaacttttcatgtgttttccacctaaaataa-tcaacctttttgaatcgatgattcacgaccaagttcatttgagctgagttt 99  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  48872665 ttagagatataatataaaaacttttcatgtgttttccacctaaaataactcaacctttttgaatcgatgattcacgaccaagttcatttgagctgatttt 48872764  T
Q  100 gctttgacagctaaaaaactagacaattaattataatttgtgtaaatgagaaaaatatactcttgtgcttgtattcatatataggttgtttgattcgtgt 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  48872765 gctttgacagctaaaaaactagacaattaattataatttgtgtaaatgagaaaaatatactcttgtgcttgtattcatatatagcttgtttgattggtgt 48872864  T
Q  200 ttcttttatacatattctgtatgctgtgaagttatcttgatctgtgatcctcc 252  Q
    ||||||||||||||||||||||||||||||||||||||| | |||| ||||||    
T  48872865 ttcttttatacatattctgtatgctgtgaagttatcttggtgtgtgttcctcc 48872917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 48877969 - 48878221
Alignment:
Q  1 ttagatatataatataaaaacttttcatgtgttttccacctaaaataa-tcaacctttttgaatcgatgattcacgaccaagttcatttgagctgagttt 99  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  48877969 ttagagatataatataaaaacttttcatgtgttttccacctaaaataactcaacctttttgaatcgatgattcacgaccaagttcatttgagctgatttt 48878068  T
Q  100 gctttgacagctaaaaaactagacaattaattataatttgtgtaaatgagaaaaatatactcttgtgcttgtattcatatataggttgtttgattcgtgt 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  48878069 gctttgacagctaaaaaactagacaattaattataatttgtgtaaatgagaaaaatatactcttgtgcttgtattcatatatagcttgtttgattggtgt 48878168  T
Q  200 ttcttttatacatattctgtatgctgtgaagttatcttgatctgtgatcctcc 252  Q
    ||||||||||||||||||||||||||||||||||||||| | |||| ||||||    
T  48878169 ttcttttatacatattctgtatgctgtgaagttatcttggtgtgtgttcctcc 48878221  T

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Target: chr4; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 8 - 252
Target Start/End: Original strand, 48865615 - 48865858
Alignment:
Q  8 tataatataaaaacttttcatgtgttttccacctaaaataa-tcaacctttttgaatcgatgattcacgaccaagttcatttgagctgagtttgctttga 106  Q
    ||||||||||||||| ||  |||||||||  | |||||||  |||| |||||||||| ||| ||||||||| |||||||| | ||||||||||| || ||    
T  48865615 tataatataaaaactgtt--tgtgttttcaccttaaaatagctcaagctttttgaatggatcattcacgacaaagttcatctaagctgagtttgtttgga 48865712  T
Q  107 cagctaaaaaactagacaattaa-ttataatttgtgtaaatgagaaaaatatactcttgtgcttgtattcatatataggttgtttgattcgtgtttcttt 205  Q
    ||||||  |||||||||| || | |||||||||||||||||||||||| ||||||| ||| |||| ||||||||||| ||||||||||| ||||||||||    
T  48865713 cagctactaaactagacagtttagttataatttgtgtaaatgagaaaattatactcctgtacttggattcatatata-gttgtttgatttgtgtttcttt 48865811  T
Q  206 tatacatattctgtatgctgtgaagttatcttgatctgtgatcctcc 252  Q
    |||||||| | ||| || ||||||||||| ||||  |||| ||||||    
T  48865812 tatacatactttgtgtgttgtgaagttattttgacgtgtgttcctcc 48865858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 169
Target Start/End: Complemental strand, 45346886 - 45346718
Alignment:
Q  7 atataatataaaaacttttcatgtgttttccacctaaaataa-tcaacctttttgaatcgatgattcacgaccaagttcatttgagctgagtttgctttg 105  Q
    |||||||||||||||  || | |||||||||||||| ||||  |||| |||||||||| ||||||||||||| ||| |||| ||||||||||| |||| |    
T  45346886 atataatataaaaaccatttacgtgttttccacctacaatagctcaagctttttgaattgatgattcacgacaaagctcatctgagctgagttcgcttgg 45346787  T
Q  106 acagctaaaaaactagacaa-ttaatt----ataatttgtgtaaatgagaaaaatatactcttgtgctt 169  Q
    |||||||||||| ||||||| ||||||    | || || |||||||||||||| ||||||| |||||||    
T  45346786 acagctaaaaaaatagacaatttaattaaaaaaaaattatgtaaatgagaaaattatactcatgtgctt 45346718  T

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Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 54 - 228
Target Start/End: Original strand, 48856168 - 48856345
Alignment:
Q  54 ctttttgaatcgatgattcacgaccaagttcatttgagctgagtttgctttgacagctaaaaaactagacaatt-aattataatttgtgta--aatgaga 150  Q
    |||||||||| ||||||||||||| || |||||||||||| |||||| || |||| |||| | | | || |||| ||||||||||| ||||  |||||||    
T  48856168 ctttttgaattgatgattcacgacaaaattcatttgagctaagtttggttggacaactaatagaatcgaaaatttaattataatttttgtataaatgaga 48856267  T
Q  151 aaaatatactcttgtgcttgtattcatatataggttgtttgattcgtgtttcttttatacatattctgtatgctgtga 228  Q
    ||| |||| || | ||||||  ||  ||||||| |||||||||| |||||||||||||| ||||||||| || |||||    
T  48856268 aaattatattcctatgcttggctttgtatatagcttgtttgatttgtgtttcttttatatatattctgtgtgttgtga 48856345  T

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Target: chr4; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 48842857 - 48842598
Alignment:
Q  1 ttagatatataatataaaaacttttcatgtgttttccacctaaaata-atcaacctttttgaatcgatgattcacgaccaagttcatttgagctgag-tt 98  Q
    ||||| |||||||||||||||| ||||||||||||||  ||||||||  | ||| |||||| || |||||||||| || |||||||| ||| ||||| ||    
T  48842857 ttagagatataatataaaaactgttcatgtgttttccgtctaaaatagcttaacttttttggattgatgattcacaacaaagttcatctgatctgagatt 48842758  T
Q  99 tgctttgacagct-aaaaaactagacaat-taattataatttgtgt--aaatgagaaaaatatactcttgtgcttgtattc--atatataggttgtttga 192  Q
    ||| | ||| ||| |||||| |||| ||| |||||||||||| |||  || |||||||| |||| || | | ||||  |||  |||||||  ||||||||    
T  48842757 tgcatggacggctaaaaaaagtagataatctaattataatttttgtacaagtgagaaaagtatattccttttcttggcttcatatatataacttgtttga 48842658  T
Q  193 ttcgtgtttcttttatacatattctgtatgctgtgaagttatcttgatctgtgatcctcc 252  Q
    || || ||||||| || | |||||||| || ||||||||||||||||| |||| ||||||    
T  48842657 tttgtctttctttcatccgtattctgtgtgttgtgaagttatcttgatgtgtgttcctcc 48842598  T

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Target: chr4; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 45364178 - 45364060
Alignment:
Q  1 ttagatatataatataaaaacttttcatgtgttttccacctaaaataa--tcaacctttttgaatcgatgattcacgaccaagttcatttgagctgagtt 98  Q
    ||||| |||||||||||||||| ||||| ||||||| ||||| ||  |  |||| |||||||||| ||||||||| ||| |||||||| || | ||||||    
T  45364178 ttagagatataatataaaaactgttcatatgttttcaacctataagtagctcaagctttttgaattgatgattcaagacaaagttcatctgtgttgagtt 45364079  T
Q  99 tgctttgacagctaaaaaa 117  Q
    |||||||||||||||||||    
T  45364078 tgctttgacagctaaaaaa 45364060  T

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Target: chr4; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 45375418 - 45375300
Alignment:
Q  1 ttagatatataatataaaaacttttcatgtgttttccacctaaaataa--tcaacctttttgaatcgatgattcacgaccaagttcatttgagctgagtt 98  Q
    ||||| |||||||||||||||| ||||| ||||||| ||||| ||  |  |||| |||||||||| ||||||||| ||| |||||||| || | ||||||    
T  45375418 ttagagatataatataaaaactgttcatatgttttcaacctataagtagctcaagctttttgaattgatgattcaagacaaagttcatctgtgttgagtt 45375319  T
Q  99 tgctttgacagctaaaaaa 117  Q
    |||||||||||||||||||    
T  45375318 tgctttgacagctaaaaaa 45375300  T

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Target: chr4; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 45382997 - 45382879
Alignment:
Q  1 ttagatatataatataaaaacttttcatgtgttttccacctaaaataa--tcaacctttttgaatcgatgattcacgaccaagttcatttgagctgagtt 98  Q
    ||||| |||||||||||||||| ||||| ||||||| ||||| ||  |  |||| |||||||||| ||||||||| ||| |||||||| || | ||||||    
T  45382997 ttagagatataatataaaaactgttcatatgttttcaacctataagtagctcaagctttttgaattgatgattcaagacaaagttcatctgtgttgagtt 45382898  T
Q  99 tgctttgacagctaaaaaa 117  Q
    |||||||||||||||||||    
T  45382897 tgctttgacagctaaaaaa 45382879  T

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Target: chr4; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 29 - 169
Target Start/End: Complemental strand, 45342390 - 45342243
Alignment:
Q  29 gtgttttccacctaaaataa-tcaacctttttgaatcgatgattcacgaccaagttcatttgagctgagtttgctttgacagctaaaaaa--ctagacaa 125  Q
    |||||||||||||| ||||  |||| |||||||||| ||||||||||||| ||| |||| ||||||||||| |||| |||||||||||||   |||||||    
T  45342390 gtgttttccacctacaatagctcaagctttttgaattgatgattcacgacaaagctcatctgagctgagttcgcttggacagctaaaaaaatatagacaa 45342291  T
Q  126 -ttaatt---ataatttgtgtaaatgagaaaaatatactcttgtgctt 169  Q
     ||||||   | || || |||||||||||||| ||||||| |||||||    
T  45342290 tttaattaaaaaaaattatgtaaatgagaaaattatactcatgtgctt 45342243  T

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Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 252
Target Start/End: Complemental strand, 45354111 - 45354032
Alignment:
Q  173 ttcatatataggttgtttgattcgtgtttcttttatacatattctgtatgctgtgaagttatcttgatctgtgatcctcc 252  Q
    ||||||||||  |||||||||| |||||| ||||||||||||||||| |  ||||||||||| |||   |||||||||||    
T  45354111 ttcatatatattttgtttgatttgtgttttttttatacatattctgtgtattgtgaagttattttggcgtgtgatcctcc 45354032  T

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Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 252
Target Start/End: Complemental strand, 45356672 - 45356593
Alignment:
Q  173 ttcatatataggttgtttgattcgtgtttcttttatacatattctgtatgctgtgaagttatcttgatctgtgatcctcc 252  Q
    ||||||||||  |||||||||| |||||| ||||||||||||||||| |  ||||||||||| |||   |||||||||||    
T  45356672 ttcatatatattttgtttgatttgtgttttttttatacatattctgtgtattgtgaagttattttggcgtgtgatcctcc 45356593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 252
Target Start/End: Complemental strand, 45363590 - 45363511
Alignment:
Q  173 ttcatatataggttgtttgattcgtgtttcttttatacatattctgtatgctgtgaagttatcttgatctgtgatcctcc 252  Q
    ||||||||||  |||||||||| |||||| ||||||||||||||||| |  ||||||||||| |||   |||||||||||    
T  45363590 ttcatatatattttgtttgatttgtgttttttttatacatattctgtgtattgtgaagttattttggcgtgtgatcctcc 45363511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 252
Target Start/End: Complemental strand, 45370413 - 45370334
Alignment:
Q  173 ttcatatataggttgtttgattcgtgtttcttttatacatattctgtatgctgtgaagttatcttgatctgtgatcctcc 252  Q
    ||||||||||  |||||||||| |||||| ||||||||||||||||| |  ||||||||||| |||   |||||||||||    
T  45370413 ttcatatatattttgtttgatttgtgttttttttatacatattctgtgtattgtgaagttattttggcgtgtgatcctcc 45370334  T

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Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 252
Target Start/End: Complemental strand, 45382409 - 45382330
Alignment:
Q  173 ttcatatataggttgtttgattcgtgtttcttttatacatattctgtatgctgtgaagttatcttgatctgtgatcctcc 252  Q
    ||||||||||  |||||||||| |||||| ||||||||||||||||| |  ||||||||||| |||   |||||||||||    
T  45382409 ttcatatatattttgtttgatttgtgttttttttatacatattctgtgtattgtgaagttattttggcgtgtgatcctcc 45382330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 127
Target Start/End: Complemental strand, 45342236 - 45342165
Alignment:
Q  58 ttgaatcgatgattcacgaccaagttcatttgagctga--gtttgctttgacagctaaaaaactagacaatt 127  Q
    |||||| ||||||||| ||| |||||||| |||| |||  ||||||||||||||| |||||| ||| |||||    
T  45342236 ttgaattgatgattcaagacaaagttcatctgagttgaaagtttgctttgacagccaaaaaattaggcaatt 45342165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 232
Target Start/End: Original strand, 48900010 - 48900106
Alignment:
Q  137 ttgtgtaaatgagaaaaat-atactcttgtgcttgtattcatatataggttgtttgattcgtgtttcttttatacatattctgtatgctgtgaagtt 232  Q
    |||| ||||||| |||||| |||||| | |||| |  ||||| ||||| |||||||||  ||||||||||||||||||||  || || |||||||||    
T  48900010 ttgtataaatgataaaaattatactcctatgctcggcttcatgtatagcttgtttgatctgtgtttcttttatacatatttcgtgtgttgtgaagtt 48900106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 127
Target Start/End: Complemental strand, 11014137 - 11014016
Alignment:
Q  7 atataatataaaaacttttcatgtgttttccacctaaaataa-tcaacctttttgaatcgatgattcacgaccaagttcatttgagctgagtttgctttg 105  Q
    |||| ||||||||||| ||||||| ||||||||||||||||  | || |||||||||| ||||||||   || |||||||| |||||||||||||||| |    
T  11014137 atatgatataaaaactattcatgtattttccacctaaaatagcttaagctttttgaattgatgattcctaacaaagttcatctgagctgagtttgcttgg 11014038  T
Q  106 acagctaaaaaactagacaatt 127  Q
    ||| |||||||| || ||||||    
T  11014037 acatctaaaaaaatacacaatt 11014016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 117
Target Start/End: Complemental strand, 11023450 - 11023339
Alignment:
Q  7 atataatataaaaacttttcatgtgttttccacctaaaataa-tcaacctttttgaatcgatgattcacgaccaagttcatttgagctgagtttgctttg 105  Q
    |||| ||||||||||| |||||||  |||||||||||||||  | || ||||| |||| |||||||||| || |||||||| |||||||||||||||||     
T  11023450 atatgatataaaaactattcatgtactttccacctaaaatagctaaagcttttggaattgatgattcacaacaaagttcatctgagctgagtttgcttta 11023351  T
Q  106 acagctaaaaaa 117  Q
    ||| ||||||||    
T  11023350 acatctaaaaaa 11023339  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 11004643 - 11004575
Alignment:
Q  7 atataatataaaaacttttcatgtgttttccacctaaaata-atcaacctttttgaatcgatgattcac 74  Q
    |||| ||||||||||| ||||||| |||||||||||||| |  | || |||||||||| ||||||||||    
T  11004643 atatgatataaaaactattcatgtattttccacctaaaaaagctaaagctttttgaattgatgattcac 11004575  T

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