View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3063_low_39 (Length: 251)
Name: NF3063_low_39
Description: NF3063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3063_low_39 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 1435782 - 1435994
Alignment:
| Q |
1 |
aatttctcagtactcacattttcggatttaatttttgctaatccatcttttgatagaatgatagaccatttaaatatataaatgtttctaatggttggtc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1435782 |
aatttctcagtactcacattttcggatttaatttttgctaatccatcttttgatagaatgatagaccatttaaatatataaatgtttctaatggctggtc |
1435881 |
T |
|
| Q |
101 |
ttataattttcgttagtctctctttacttaagggaagaaaaaagtgcataatcttaaacatggttgtcaagttttatgtctagtttattgtgttttcatg |
200 |
Q |
| |
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|| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
1435882 |
ttgtaattttcgttagtctctctttacttaaggggagaaaaaagtgcataatcttaaacatggttgtcgagttttatgtctagtttattgtgttttcatg |
1435981 |
T |
|
| Q |
201 |
gtttaaagataag |
213 |
Q |
| |
|
||||||||||||| |
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|
| T |
1435982 |
gtttaaagataag |
1435994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 114; Significance: 6e-58; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 28056478 - 28056691
Alignment:
| Q |
1 |
aatttctcagtactcacattttcggatttaatttttgctaatccatcttttgatagaatgatagaccatttaaatatataaatgtttctaatggttggtc |
100 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||| | ||||||||||||| |||||| |
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| T |
28056478 |
aatttctcagtactcatatttttggatttaatttta-ctaatccatctattgatagaatgatagaccatttaaataca--aatgtttctaatgattggtc |
28056574 |
T |
|
| Q |
101 |
ttataattttcgttagtctctctttacttaagggaagaaaaaagtgcat--------aatcttaaacatggttgtcaagttttatgtctagtttattgtg |
192 |
Q |
| |
|
||||||||||| |||||| ||||||||||| |||||| ||||||||||| |||||| |||||||||||| ||||||||||||||||||||||| |
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| T |
28056575 |
ttataattttccttagtccctctttacttatgggaag-aaaaagtgcatgtgacccgaatctttaacatggttgtcgagttttatgtctagtttattgtg |
28056673 |
T |
|
| Q |
193 |
ttttcatggtttaaagat |
210 |
Q |
| |
|
||| |||||||||||||| |
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|
| T |
28056674 |
tttccatggtttaaagat |
28056691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 28087119 - 28087334
Alignment:
| Q |
1 |
aatttctcagtactcacattttcggatttaatttttgctaatccatcttttgatagaatgatagaccatttaaatatataaatgtttctaatggttggtc |
100 |
Q |
| |
|
||||| ||||| |||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||| | || ||||||||||||||||||| || |
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| T |
28087119 |
aatttgtcagttctcacatttttggatttaatatttgctaatccatctattgatagaatgatagaccatttga--atgtaaatgtttctaatggttgatc |
28087216 |
T |
|
| Q |
101 |
ttataattttcgttagtctctctttacttaagggaagaaaaaagtgcat--------aatcttaaacatggttgtcaagttttatgtctagtttattgtg |
192 |
Q |
| |
|
||||||||||| |||||| |||||| ||| ||||||||||||||||| |||||||||||||| ||| ||| |||||||||| |||||||| |
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|
| T |
28087217 |
ttataattttcattagtccctctttgcttgtaggaagaaaaaagtgcatatgtcttgaatcttaaacatggacgtcgagtattatgtctaggttattgtg |
28087316 |
T |
|
| Q |
193 |
ttttcatggtttaaagat |
210 |
Q |
| |
|
||||||| |||||||||| |
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|
| T |
28087317 |
ttttcattgtttaaagat |
28087334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 28026698 - 28026824
Alignment:
| Q |
1 |
aatttctcagtactcacattttcggatttaatttttgctaatccatcttttgatagaatgatagaccatttaaatatataaatgtttctaatggttggtc |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||| |||||||||| |||||||||||||| |
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|
| T |
28026698 |
aatttgtcagtactcacattttcggatttaatttt-gctaatccatctattgataaaatgatagaccatttaa--atataaatgtgtctaatggttggtc |
28026794 |
T |
|
| Q |
101 |
ttataattttcgttagtctctctttactta |
130 |
Q |
| |
|
||||| ||||| ||||||| | |||||||| |
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|
| T |
28026795 |
ttatagttttccttagtctgtatttactta |
28026824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 27926715 - 27926570
Alignment:
| Q |
1 |
aatttctcagtactcacattttcggatttaatttttgctaatccatcttttgatagaatgatagaccatttaaatatataaatgtttctaatggttggtc |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||||| |||||| |||||||||||||||||||||||| ||| |||| ||| |||||||||||| |
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|
| T |
27926715 |
aatttctcagtactcacattttcggatgtaatttt-gctaacccatctattgatagaatgatagaccatttaa--atacaaatatttataatggttggtc |
27926619 |
T |
|
| Q |
101 |
ttataattttcgttagtctctctttacttaagggaagaaaaaagtgcat |
149 |
Q |
| |
|
|||||||||| || ||| |||||||| || ||||||||||||||||| |
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|
| T |
27926618 |
ttataatttttcttggtccctctttacctataggaagaaaaaagtgcat |
27926570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 28027363 - 28027423
Alignment:
| Q |
150 |
aatcttaaacatggttgtcaagttttatgtctagtttattgtgttttcatggtttaaagat |
210 |
Q |
| |
|
||||||||||||||||||| | ||||||||| |||||||||||||| |||||||||||||| |
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|
| T |
28027363 |
aatcttaaacatggttgtcgatttttatgtcaagtttattgtgtttccatggtttaaagat |
28027423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 28012440 - 28012487
Alignment:
| Q |
1 |
aatttctcagtactcacattttcggatttaatttttgctaatccatct |
48 |
Q |
| |
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|||||||||||| |||| ||||| |||||||||| ||||||||||||| |
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| T |
28012440 |
aatttctcagtaatcactttttctgatttaatttgtgctaatccatct |
28012487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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