View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3063_low_4 (Length: 482)
Name: NF3063_low_4
Description: NF3063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3063_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 412; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 1 - 466
Target Start/End: Complemental strand, 44631442 - 44630965
Alignment:
| Q |
1 |
gcgttatgatttatgggagaatcctaagcttttgaccattggagtatatgttgggtgttgatttgatgcaagagtggcgtagatagcaattggactataa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44631442 |
gcgttatgatttatgggagaatcctaagcttttgaccattggagtatatgttgggtgttgatttgatgcaagagtggcgtagatagcaattggactataa |
44631343 |
T |
|
| Q |
101 |
ctgaaggtttgggcattggaattattttgattgcttagttaagtggaaggaattcacacttatcactaatttcttctataaatatcataattcataattg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
44631342 |
ctgaaggtttgggcattggaattattttgattgcttagttaagtggaaggaattcacacttatcactaatttcttctttaaatatcataattcataattg |
44631243 |
T |
|
| Q |
201 |
cttcttcttcattattctctctcagacgtatatcaaaaaatgcaacatcctccttcgtcctctgctgctctgaaaccccgcagaa---gaagctcagttc |
297 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
44631242 |
cttcttctttattattctctctcagacgtacatcaaaaaatgcaacatcctccttcgtcctctgctgctctgaaaccccgcagaagaagaagctcagttc |
44631143 |
T |
|
| Q |
298 |
ttcaaccaagtggtgagtc---------tgttgattcactattcattccctgctgcaattcaatggatatatattcttgttggaagatgattaataacat |
388 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44631142 |
ttcaatcaagtggtgagtctgttggttatgttgattcactattcattccctgctgcaattcaatggatatatattcttgttggaagatgattaataacat |
44631043 |
T |
|
| Q |
389 |
gataatgtgttccattgtagctaatttaatcatctatgattcatttttcctttctctacttttctatcagattttaat |
466 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
44631042 |
gataatgtgttccattgtagctaatttaatcatctatgattaatttttcctttctctacttttctatcagattttaat |
44630965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 151 - 466
Target Start/End: Complemental strand, 44798272 - 44797945
Alignment:
| Q |
151 |
aattcacacttatcactaatttcttctataaatatcataattcataattgcttcttcttcattattctctctcagacgtatatcaaaaaatgcaacatcc |
250 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
44798272 |
aattcacacttatcactaatttcttctttaaatatcataattcataattgcttcttctttattattctctctcagacgtacatcaaaaaatgcaacatcc |
44798173 |
T |
|
| Q |
251 |
tccttcgtcctctgctgctctgaaaccccgcagaagaag---ctcagttcttcaaccaagtggtgagtctgttg---------attcactattcattccc |
338 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
44798172 |
tccttcgtcctctgctgctctgaaaccccgcagaagaagaagctcagttcttcaatcaagtggtgagtctgttggttatgttgattcactattcattccc |
44798073 |
T |
|
| Q |
339 |
tgctgcaattcaatggatatatattcttgttggaagatgattaataacatgataatgtgttccattgtagctaatttaatcatctatgattcatttttcc |
438 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
44798072 |
tgctgcaattcaatggatatatattcttgttggaagatgattaataacatgataatgtgttccattgtagctaatttaatcatctatgattaatttttcc |
44797973 |
T |
|
| Q |
439 |
tttctctacttttctatcagattttaat |
466 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
44797972 |
tttctctacttttctatcagattttaat |
44797945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 151 - 466
Target Start/End: Original strand, 35161839 - 35162169
Alignment:
| Q |
151 |
aattcacacttatcactaatttcttctataaatatcataattcataattgcttcttcttcattattctctctcagacgtatatcaaaaaatgcaacatcc |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
35161839 |
aattcacacttatcactaatttcttctataaatatcataattcataatt------tctttattattctctctcagacgtatgtcaaaaaatgcaacatcc |
35161932 |
T |
|
| Q |
251 |
tccttcgtcctctgctgctctgaaaccccgcagaagaa------------gctcagttcttcaaccaagtggtgagtctgtt---------gattcacta |
329 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
35161933 |
tccttcgtcttctgctgctctgaaatcccgcagaagaacccgcagaagaagccgagttcttcaaccaagtggtgagtctgttcgttatgttgattcacta |
35162032 |
T |
|
| Q |
330 |
ttcattccctgctgcaattcaatggatatatattcttgttggaagatgattaataacatgataatgtgttccattgtagctaatttaatcatctatgatt |
429 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
35162033 |
ttcattccctgctgcaattcaatggatatatattcttgttggaagatgattaataacatgataatgtgttccattgtagctaatttaatcatcgatgatt |
35162132 |
T |
|
| Q |
430 |
catttttcctttctctacttttctatcagattttaat |
466 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
35162133 |
aatttttcctttctctacttttctatcagattttaat |
35162169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 364 - 466
Target Start/End: Original strand, 39845273 - 39845372
Alignment:
| Q |
364 |
cttgttggaagatgattaataacatgataatgtgttccattgtagctaatttaatcatctatgattcatttttcctttctctacttttctatcagatttt |
463 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||| |||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
39845273 |
cttgttggaagatgattaatgacatgataatgtgttccattgtagttaattta---atcgatgattaattgttcctttctctacttttctatcagatttt |
39845369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 402 - 466
Target Start/End: Original strand, 39840359 - 39840420
Alignment:
| Q |
402 |
attgtagctaatttaatcatctatgattcatttttcctttctctacttttctatcagattttaat |
466 |
Q |
| |
|
|||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
39840359 |
attgtagctaatttaatcc---atgattaattgttcctttctctacttttctatcagattttaat |
39840420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 317 - 362
Target Start/End: Original strand, 39845195 - 39845241
Alignment:
| Q |
317 |
tgttgattcactattcattccct-gctgcaattcaatggatatatat |
362 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
39845195 |
tgttgattcactattcattccctccctgcaattcaatggatatatat |
39845241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 243
Target Start/End: Original strand, 39840176 - 39840227
Alignment:
| Q |
192 |
tcataattgcttcttcttcattattctctctcagacgtatatcaaaaaatgc |
243 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
39840176 |
tcataattggttcttctttcttattctctctcagacgtacgtcaaaaaatgc |
39840227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University