View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3063_low_43 (Length: 238)
Name: NF3063_low_43
Description: NF3063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3063_low_43 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 1435776 - 1435554
Alignment:
| Q |
1 |
aagaagaatgttcaggagatacacaacatcaaatatgcttctaagtaaaacaagtgttgttgccattgtccagttgatttgaatacatttattatcctac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1435776 |
aagaagaatgttcaggagatacacaacatcaaatatgcttctaagtaaaacaagtgttgttgccattgtccagttgatttgaatacatttattatcctac |
1435677 |
T |
|
| Q |
101 |
agaaaatggatgagaaaaagtgaagtttttattttacttttaaggaaaaaagtaaagtaaattatgttggaagattttatacttaaataaaatgaaaaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1435676 |
agaaaatggatgagaaaaagtgaagtttttattttacttttaaggaaaaaagtaaagtaaattatgttggaagattttatacttaaataaaatgaaaaga |
1435577 |
T |
|
| Q |
201 |
atcaaaccttgtgcacataaagt |
223 |
Q |
| |
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|||||| |||||||||||||||| |
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| T |
1435576 |
atcaaaacttgtgcacataaagt |
1435554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 131; Significance: 4e-68; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 2 - 219
Target Start/End: Complemental strand, 28056471 - 28056251
Alignment:
| Q |
2 |
agaagaatgttcaggagatacacaacatcaaatatgcttctaagtaaaacaagtgttgttgccattgtccagttgatttgaatacatttattatcctaca |
101 |
Q |
| |
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||||||||||||| |||||||||||||||| |||||||||||||| ||| |||||| ||||||||||| ||||||||||||||||||||||||||| || |
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| T |
28056471 |
agaagaatgttcaagagatacacaacatcagttatgcttctaagtataactagtgttcttgccattgtcaagttgatttgaatacatttattatcctgca |
28056372 |
T |
|
| Q |
102 |
gaaaatggatgagaaaaagtgaagtttttattttacttt---taaggaaaaaagtaaagtaaattatgttggaagattttatacttaaataaaatgaaaa |
198 |
Q |
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||||||| |||||||||||||||| || ||||| ||| |||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||| |
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| T |
28056371 |
gaaaatgaatgagaaaaagtgaagattgtatttatttttaagtaaggaaaaaagtaaagtaaatgatgttggaaaattttacacttaaataaaatgaaaa |
28056272 |
T |
|
| Q |
199 |
gaatcaaaccttgtgcacata |
219 |
Q |
| |
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|||| ||||||||| |||||| |
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| T |
28056271 |
gaattaaaccttgttcacata |
28056251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 2 - 219
Target Start/End: Original strand, 27926722 - 27926943
Alignment:
| Q |
2 |
agaagaatgttcaggagatacacaacatcaaatatgcttctaagtaaaacaagtgttgttgccattgtccagttgatttgaatacatttattatcctaca |
101 |
Q |
| |
|
||||||||||||| ||||||||||| |||| |||||||||||||| |||||||||| ||| ||||| | ||||||| | ||||||||||| |||| || |
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| T |
27926722 |
agaagaatgttcaagagatacacaatatcagttatgcttctaagtacaacaagtgttcttgacattgccatgttgattcggatacatttattttcctgca |
27926821 |
T |
|
| Q |
102 |
gaaaatggatgagaaaaagtgaagtttttattttactttt----aaggaaaaaagtaaagtaaattatgttggaagattttatacttaaataaaatgaaa |
197 |
Q |
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|
||||| | |||||||||||| ||||||| |||||| |||| ||||||||| ||| ||||||| |||||||||||||||| | ||||||||||||||| |
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| T |
27926822 |
gaaaacgaatgagaaaaagttaagttttaattttatttttaagcaaggaaaaaggtacagtaaatgatgttggaagattttacaattaaataaaatgaaa |
27926921 |
T |
|
| Q |
198 |
agaatcaaaccttgtgcacata |
219 |
Q |
| |
|
||||| | ||||||| |||||| |
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|
| T |
27926922 |
agaattataccttgttcacata |
27926943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 4 - 199
Target Start/End: Complemental strand, 28026689 - 28026490
Alignment:
| Q |
4 |
aagaatgttcaggagatacacaacatcaaatatgcttctaagtaaaacaagtgttgttgccattgtccagttgatttgaatacatttattatcctacaga |
103 |
Q |
| |
|
||||||||||| |||||| ||||||||| ||| |||||||||| |||||||||||||||||||| | || |||| |||||||||||||||||| |||| |
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| T |
28026689 |
aagaatgttcaagagataaacaacatcagttatacttctaagtacaacaagtgttgttgccattggcatgtcgattcgaatacatttattatcctgcaga |
28026590 |
T |
|
| Q |
104 |
aaatggatgagaaaaagtgaagtttttattttactttt----aaggaaaaaagtaaagtaaattatgttggaagattttatacttaaataaaatgaaaag |
199 |
Q |
| |
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||| | |||||||| |||||||||||||||| |||| ||||||||| ||||||||||| |||||||||||||||| | ||||||||||||||||| |
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| T |
28026589 |
aaacgaatgagaaatgatgaagtttttattttatttttaagcaaggaaaaaggtaaagtaaatgatgttggaagattttacaattaaataaaatgaaaag |
28026490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 2 - 209
Target Start/End: Complemental strand, 28087112 - 28086901
Alignment:
| Q |
2 |
agaagaatgttcaggagatacacaacatcaaatatgcttctaagtaaaacaagtgttgttgccattgtccagttgatttgaatacatttattatcctaca |
101 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||| | || || |
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| T |
28087112 |
agaagaatgttcaagagatacacaacatcggttatgcttctaagtacaacaagtgttgttgccattgcgtggttgattcgaatacatttatttttctgca |
28087013 |
T |
|
| Q |
102 |
gaaaatggatgagaaaaagtgaagtttttattttacttttaag----gaaaaaagtaaagt-aaattatgttggaagattttatacttaaataaaatgaa |
196 |
Q |
| |
|
||||| | | |||||| | |||| |||||||||| || |||| ||||||||||| || |||| |||||||||| ||||| |||||| ||||||||| |
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| T |
28087012 |
gaaaacgaaaaagaaaaggcgaag-ttttattttatttgtaagtaaagaaaaaagtaatgtaaaatgatgttggaaggttttaaacttaattaaaatgaa |
28086914 |
T |
|
| Q |
197 |
aagaatcaaacct |
209 |
Q |
| |
|
|||||||| |||| |
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| T |
28086913 |
aagaatcatacct |
28086901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 4 - 130
Target Start/End: Complemental strand, 27907089 - 27906966
Alignment:
| Q |
4 |
aagaatgttcaggagatacacaacatcaaatatgcttctaagtaaaacaagtgttgttgccattgtccagttgatttgaatacatttattatcctacaga |
103 |
Q |
| |
|
||||||||||| || | ||| | ||||| ||||||||||| || ||||||||||||||||||| |||| ||||| ||||||| ||||||| |||| |
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| T |
27907089 |
aagaatgttcaagaaacacatgatatcaattatgcttctaattacaacaagtgttgttgccattctccaattgataacaatacat---ttatcctgcaga |
27906993 |
T |
|
| Q |
104 |
aaatggatgagaaaaagtgaagttttt |
130 |
Q |
| |
|
||||| ||||||||| ||||||||||| |
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|
| T |
27906992 |
aaatgaatgagaaaaggtgaagttttt |
27906966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 119
Target Start/End: Complemental strand, 27996147 - 27996030
Alignment:
| Q |
2 |
agaagaatgttcaggagatacacaacatcaaatatgcttctaagtaaaacaagtgttgttgccattgtccagttgatttgaatacatttattatcctaca |
101 |
Q |
| |
|
||||||||||||| | ||||| ||||| | |||||||| ||||||| |||| ||||||||||||||| ||||| ||||||||||| ||||| | |
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|
| T |
27996147 |
agaagaatgttcaaaaaatacaggacatccattatgcttcgaagtaaagaaagtaatgttgccattgtccaattgataacaatacatttatcatcctgta |
27996048 |
T |
|
| Q |
102 |
gaaaatggatgagaaaaa |
119 |
Q |
| |
|
||||||| |||||||||| |
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|
| T |
27996047 |
gaaaatgaatgagaaaaa |
27996030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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