View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3063_low_49 (Length: 231)
Name: NF3063_low_49
Description: NF3063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3063_low_49 |
 | |
|
| [»] chr4 (3 HSPs) |
| |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 6 - 231
Target Start/End: Original strand, 48872034 - 48872259
Alignment:
| Q |
6 |
aaatctaacacatcggcattcctttttctgaacctaagtttgaagagtcgtatcagtaagaagtaagaaataattctagaggaagcaatcgttaaaaact |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
48872034 |
aaatctaacacatcggcattcctttttctgaacctaagtttgaagagtcatatcagcaagaagtaagatataattctagaggaagcagtcgttaaaaact |
48872133 |
T |
|
| Q |
106 |
agtagagaatgtattagttttgcatacatgatttataaaactgacttgcaaagtgaagaagactaacagtggtttatgaaaactgcatcagctttcacat |
205 |
Q |
| |
|
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48872134 |
aggagagaatgtattagttttgcatacatcatttataaaactgacttgcaaagtgaagaagactaacagtggtttatgaaaactgcatcagctttcacat |
48872233 |
T |
|
| Q |
206 |
tttcaaactgaactgctacagcatga |
231 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
48872234 |
tttcaaactgaactgctacagcatga |
48872259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 6 - 231
Target Start/End: Original strand, 48877338 - 48877563
Alignment:
| Q |
6 |
aaatctaacacatcggcattcctttttctgaacctaagtttgaagagtcgtatcagtaagaagtaagaaataattctagaggaagcaatcgttaaaaact |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
48877338 |
aaatctaacacatcggcattcctttttctgaacctaagtttgaagagtcatatcagcaagaagtaagatataattctagaggaagcagtcgttaaaaact |
48877437 |
T |
|
| Q |
106 |
agtagagaatgtattagttttgcatacatgatttataaaactgacttgcaaagtgaagaagactaacagtggtttatgaaaactgcatcagctttcacat |
205 |
Q |
| |
|
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48877438 |
aggagagaatgtattagttttgcatacatcatttataaaactgacttgcaaagtgaagaagactaacagtggtttatgaaaactgcatcagctttcacat |
48877537 |
T |
|
| Q |
206 |
tttcaaactgaactgctacagcatga |
231 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
48877538 |
tttcaaactgaactgctacagcatga |
48877563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 6 - 192
Target Start/End: Original strand, 48887744 - 48887930
Alignment:
| Q |
6 |
aaatctaacacatcggcattcctttttctgaacctaagtttgaagagtcgtatcagtaagaagtaagaaataattctagaggaagcaatcgttaaaaact |
105 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
48887744 |
aaatctaacacatcggcattcccttttctgaacctaagtttgaagagtcgtattcgtaagaagtaagaaataattctagaggaagcagtcggtaaaaact |
48887843 |
T |
|
| Q |
106 |
agtagagaatgtattagttttgcatacatgatttataaaactgacttgcaaagtgaagaagactaacagtggtttatgaaaactgca |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48887844 |
agtagagaatgtattagttttgcatacatgatttataaaactgacttgcaaagtgaagaagactaacagtggtttatgaaaactgca |
48887930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 231
Target Start/End: Original strand, 7491173 - 7491236
Alignment:
| Q |
168 |
ctaacagtggtttatgaaaactgcatcagctttcacattttcaaactgaactgctacagcatga |
231 |
Q |
| |
|
|||| ||||| |||||||| ||||| |||||||||||||| ||| || |||||||||||||||| |
|
|
| T |
7491173 |
ctaatagtggattatgaaatctgcaccagctttcacatttacaatctaaactgctacagcatga |
7491236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 114
Target Start/End: Original strand, 7491066 - 7491167
Alignment:
| Q |
6 |
aaatctaacacatcggcattcctttttctgaacctaagtttgaagagtcgtatcagtaagaagtaagaaataattctagaggaagcaatcgttaaaaact |
105 |
Q |
| |
|
|||| |||||||| |||| || ||||| |||||||||||| ||||||| |||| ||||||||||||||||||| |||||| || || |||||| |
|
|
| T |
7491066 |
aaatttaacacatttgcatgcccttttcggaacctaagtttcaagagtcttatc-------agtaagaaataattctagatgaagcagtctttgaaaact |
7491158 |
T |
|
| Q |
106 |
agtagagaa |
114 |
Q |
| |
|
| ||||||| |
|
|
| T |
7491159 |
attagagaa |
7491167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University