View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3063_low_50 (Length: 230)
Name: NF3063_low_50
Description: NF3063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3063_low_50 |
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Alignment Details
Target: chr7 (Bit Score: 97; Significance: 8e-48; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 62 - 187
Target Start/End: Complemental strand, 8910516 - 8910389
Alignment:
| Q |
62 |
aaaatcacttaaataattgcctcttacagccctggaaggtactgttggctacaaaatcataagaaaaaatgaagaattaagtcacccatctttggtaaa- |
160 |
Q |
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| T |
8910516 |
aaaatcattaaaataattgccccttacagccctcgaaggtactgttggctacaaaatcataagaaaaaattaagaattaagtcacccatctttggtaaaa |
8910417 |
T |
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| Q |
161 |
-acagtcctaaatataatcctaaattcc |
187 |
Q |
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| T |
8910416 |
cacagtcctaaatataatcctaaattcc |
8910389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 55 - 145
Target Start/End: Complemental strand, 9010998 - 9010908
Alignment:
| Q |
55 |
attatgaaaaatcacttaaataattgcctcttacagccctggaaggtactgttggctacaaaatcataagaaaaaatgaagaattaagtca |
145 |
Q |
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| T |
9010998 |
attatgaaaaatcacttaaataattgccccttatagccctcgaaggtactgttggctacaaaatcataagaaaaaatgaagaactaagtca |
9010908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 9010816 - 9010770
Alignment:
| Q |
143 |
tcacccatctttggtaaaaca--gtcctaaatataatcctaaattcc |
187 |
Q |
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| T |
9010816 |
tcacccttctttggtaaaacacagtcctaaatataatcctaaattcc |
9010770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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