View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3063_low_55 (Length: 223)
Name: NF3063_low_55
Description: NF3063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3063_low_55 |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 36152390 - 36152176
Alignment:
| Q |
1 |
caacaacatgtccatgatagggcataactgcatgaactcttttagctctttaaaatgcaacttagatactaactgcatgaaggggaaacaattcttgagt |
100 |
Q |
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| T |
36152390 |
caacgacatgtccatgatagggcatagctgcatgaactcttttagctctttaaaatgcatcttagatactaactgcatgaaggggaaacaattcttgagt |
36152291 |
T |
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| Q |
101 |
ttccaaagcatgtatgatatattaatatgtttgattactttgatcaatttgcaaatggaaagaaggattatcagacttgagagatcgaactcttcaaact |
200 |
Q |
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| T |
36152290 |
ttccaaagca--tatgatatattaatatgtttgattactttgatcaatttgcagatggaacgaaggattatcagacttgagagatcgaactcttcaaact |
36152193 |
T |
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| Q |
201 |
agagtttatctgtgctg |
217 |
Q |
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||||||||||||||||| |
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| T |
36152192 |
agagtttatctgtgctg |
36152176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 6 - 203
Target Start/End: Complemental strand, 36157310 - 36157113
Alignment:
| Q |
6 |
acatgtccatgatagggcataactgcatgaactcttttagctctttaaaatgcaacttagatactaactgcatgaaggggaaacaattcttgagtttcca |
105 |
Q |
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|||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
36157310 |
acatgtccatgatagggcgtagctgcatgaactcttttagctctttaaaatgcatcttagatactaactgcatgaaaaggaaacaattcttgagtttcca |
36157211 |
T |
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| Q |
106 |
aagcatgtatgatatattaatatgtttgattactttgatcaatttgcaaatggaaagaaggattatcagacttgagagatcgaactcttcaaactaga |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||| ||||||||| |||||| |
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| T |
36157210 |
aagcatgtatgatatattaatatgtttgattactttgatcaatttgcagatggagcggaggattatcagacttgagagatcaaactcttcagactaga |
36157113 |
T |
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