View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3063_low_9 (Length: 451)

Name: NF3063_low_9
Description: NF3063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3063_low_9
NF3063_low_9
[»] chr6 (13 HSPs)
chr6 (17-445)||(23266248-23266676)
chr6 (7-445)||(23247289-23247733)
chr6 (17-438)||(23251714-23252138)
chr6 (17-445)||(23257687-23258121)
chr6 (90-438)||(23283439-23283787)
chr6 (139-443)||(23586957-23587261)
chr6 (211-443)||(23391342-23391574)
chr6 (229-443)||(23583164-23583377)
chr6 (95-444)||(23289757-23290106)
chr6 (139-443)||(23633991-23634295)
chr6 (227-438)||(23506899-23507110)
chr6 (208-428)||(23594092-23594312)
chr6 (208-271)||(23506718-23506781)
[»] chr5 (1 HSPs)
chr5 (277-335)||(3996385-3996443)
[»] chr4 (1 HSPs)
chr4 (274-335)||(41521739-41521800)


Alignment Details
Target: chr6 (Bit Score: 401; Significance: 0; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 17 - 445
Target Start/End: Original strand, 23266248 - 23266676
Alignment:
Q  17 ccatattcctccaaaactccggcatattcaacatttcctcttcttcttccacacaaaacatattcaactcctttgtggcgacgacagctacaacagtctc 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  23266248 ccatattcctccaaaactccggcatattcaacatttcctcttcttcttccacacaaaacatattcaactcctttgtggcgacaacagctacaacagtctc 23266347  T
Q  117 aatgttggtaatcattatagtattgtctggtctaaaagcttcggcggcttttgtagctgccttttgaatatcttttattgaggaagttgctggaatagga 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23266348 aatgttggtaatcattatagtattgtctggtctaaaagcttcggcggcttttgtagctgccttttgaatatcttttattgaggaagttgctggaatagga 23266447  T
Q  217 agccgccacaccgagtctgcaaaattgagacaggcgtagcgacccctcaatgccatcgcagcaacatcatgggctcgggctgccatatcagctgttggaa 316  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||    
T  23266448 agccgccacaccgaatctgcaaaattgagacaggcgtagcgacccctcaatgccatcgcagcaacatcgtgggctcgggctgccatctcggctgttggaa 23266547  T
Q  317 aagttcctagccaaattctagtcttcgtgttgggctccctcatttcacaaacccatttatctaagttcctcttccttacacctctatacaccgggtggcg 416  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23266548 aagttcctagccaaattctagtcttcgtgttgggttccctcatttcacaaacccatttatctaagttcctcttccttacacctctatacaccgggtggcg 23266647  T
Q  417 agtttccttgaatatcttcctctctgctc 445  Q
    |||||||||||||||||||||| ||||||    
T  23266648 agtttccttgaatatcttcctccctgctc 23266676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 7 - 445
Target Start/End: Original strand, 23247289 - 23247733
Alignment:
Q  7 gacatcatcaccatattcctccaaaactccggcatattcaacatttcctcttcttc------ttccacacaaaacatattcaactcctttgtggcgacga 100  Q
    ||||||| | ||||||||||||| ||||| |||||||||||||||||||| | |||      |||||||||||||||||||| |||||||||||||||||    
T  23247289 gacatcaacgccatattcctccacaactctggcatattcaacatttcctcctgttcatcaacttccacacaaaacatattcagctcctttgtggcgacga 23247388  T
Q  101 cagctacaacagtctcaatgttggtaatcattatagtattgtctggtctaaaagcttcggcggcttttgtagctgccttttgaatatcttttattgagga 200  Q
    || |||| | ||| ||||| ||| || |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||    
T  23247389 catctacgatagtgtcaatattgttagtcattaaagtattgtctggtctaaaagcttcggccgcttttgtagctgccttttgaatatcttttattgcgga 23247488  T
Q  201 agttgctggaataggaagccgccacaccgagtctgcaaaattgagacaggcgtagcgacccctcaatgccatcgcagcaacatcatgggctcgggctgcc 300  Q
    |||||||||||||||||| ||||||||||||||||  |||||||||||||| ||||| |||||||||||||| ||||||||||| ||||||||||| |||    
T  23247489 agttgctggaataggaaggcgccacaccgagtctgagaaattgagacaggcatagcggcccctcaatgccattgcagcaacatcgtgggctcgggcagcc 23247588  T
Q  301 atatcagctgttggaaaagttcctagccaaattctagtcttcgtgttgggctccctcatttcacaaacccatttatctaagttcctcttccttacacctc 400  Q
    || || | ||||||||||||||| |||||||| ||| |||| ||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  23247589 atctccggtgttggaaaagttcccagccaaatcctattctttgtgttcggctccctcatttcacaaacccatttatttaagttcctcttcctcacacctc 23247688  T
Q  401 tatacaccgggtggcgagtttccttgaatatcttcctctctgctc 445  Q
    |||| |||||||||||||||||||| |||||||||||| ||||||    
T  23247689 tatagaccgggtggcgagtttccttaaatatcttcctccctgctc 23247733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 17 - 438
Target Start/End: Original strand, 23251714 - 23252138
Alignment:
Q  17 ccatattcctccaaaactccggcatattcaacatttcctcttcttc---ttccacacaaaacatattcaactcctttgtggcgacgacagctacaacagt 113  Q
    ||||||||||||| ||||| ||||||||||||| ||||||||||||   ||| |||| ||||||||||| ||||| ||| ||||| ||||||||||| ||    
T  23251714 ccatattcctccacaactctggcatattcaacacttcctcttcttcgacttcaacacgaaacatattcagctcctgtgttgcgacaacagctacaacggt 23251813  T
Q  114 ctcaatgttggtaatcattatagtattgtctggtctaaaagcttcggcggcttttgtagctgccttttgaatatcttttattgaggaagttgctggaata 213  Q
     |||||||   |  |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  23251814 gtcaatgtcactggtcattaaagtattgtctggtctaaaagcttcggcggcttttgtagctgccttttgaatatcttttatcgcggaagttgctggaata 23251913  T
Q  214 ggaagccgccacaccgagtctgcaaaattgagacaggcgtagcgacccctcaatgccatcgcagcaacatcatgggctcgggctgccatatcagctgttg 313  Q
    ||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| |||||||| ||||||||||||||||| || |||||||    
T  23251914 ggaaggcgccacaccgagtctgcaaaattgagacaggcatagcggcccctcaatgctatcgcggcaacatcgtgggctcgggctgccatctcggctgttg 23252013  T
Q  314 gaaaagttcctagccaaattctagtcttcgtgttgggctccctcatttcacaaacccatttatctaagttcctcttccttacacctctatacaccgggtg 413  Q
    ||||||||||||||||||| ||| |||| ||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| || |||||    
T  23252014 gaaaagttcctagccaaatcctattctttgtgttcggctccctcatttcacaaacccatttatttaagttcctcttcctcacacctctatagacagggtg 23252113  T
Q  414 gcgagtttccttgaatatcttcctc 438  Q
     ||||||||||| ||||||||||||    
T  23252114 acgagtttccttaaatatcttcctc 23252138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 17 - 445
Target Start/End: Original strand, 23257687 - 23258121
Alignment:
Q  17 ccatattcctccaaaactccggcatattcaacatttcct---cttcttc---ttccacacaaaacatattcaactcctttgtggcgacgacagctacaac 110  Q
    ||||||||||| | || || |||||||||||||||||||   |||||||   ||||||||||||||||||||||||||||||||| ||||||| ||| ||    
T  23257687 ccatattcctcaacaattctggcatattcaacatttcctgctcttcttcgacttccacacaaaacatattcaactcctttgtggccacgacaggtactac 23257786  T
Q  111 agtctcaatgttggtaatcattatagtattgtctggtctaaaagcttcggcggcttttgtagctgccttttgaatatcttttattgaggaagttgctgga 210  Q
     || ||||| |   ||||||||| ||| ||||||||||||||||||||||| ||||  | ||| |||||||||||||||||||| | |||||||||||||    
T  23257787 ggtgtcaatatcattaatcattaaagtcttgtctggtctaaaagcttcggcagcttcagcagccgccttttgaatatcttttatcgcggaagttgctgga 23257886  T
Q  211 ataggaagccgccacaccgagtctgcaaaattgagacaggcgtagcgacccctcaatgccatcgcagcaacatcatgggctcgggctgccatatcagctg 310  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||| || |||||||| ||||||||||||||||| || | ||    
T  23257887 ataggaaggcgccacaccgagtctgcaaaattgagacaggcatagcggcccctcaatgccattgcggcaacatcgtgggctcgggctgccatttcgggtg 23257986  T
Q  311 ttggaaaagttcctagccaaattctagtcttcgtgttgggctccctcatttcacaaacccatttatctaagttcctcttccttacacctctatacaccgg 410  Q
    |||||||||| || |||||||| || ||||| |||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||    
T  23257987 ttggaaaagtccccagccaaatcctggtctttgtgttgggttccctcatttcacacacccatttatctaagttcctcttcctcacacctctatacatcgg 23258086  T
Q  411 gtggcgagtttccttgaatatcttcctctctgctc 445  Q
    |||||||||||||||||| ||||||||| ||||||    
T  23258087 gtggcgagtttccttgaagatcttcctccctgctc 23258121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 90 - 438
Target Start/End: Original strand, 23283439 - 23283787
Alignment:
Q  90 tgtggcgacgacagctacaacagtctcaatgttggtaatcattatagtattgtctggtctaaaagcttcggcggcttttgtagctgccttttgaatatct 189  Q
    |||| |||||||||| ||||| || ||||||| | || |||||| ||| ||||||||||| ||||| |||||||||| || ||||||| ||||||| |||    
T  23283439 tgtgacgacgacagccacaacggtgtcaatgtcgttagtcattaaagtcttgtctggtctgaaagcctcggcggcttctgcagctgccctttgaatgtct 23283538  T
Q  190 tttattgaggaagttgctggaataggaagccgccacaccgagtctgcaaaattgagacaggcgtagcgacccctcaatgccatcgcagcaacatcatggg 289  Q
    |||  |   |  |  || ||||||||||||| |||||||||||||||||| ||||||||||| ||||| ||||| |||||||| || ||||| || || |    
T  23283539 tttgcttcagcggaggcaggaataggaagcctccacaccgagtctgcaaagttgagacaggcatagcggccccttaatgccatggctgcaacgtcgtgtg 23283638  T
Q  290 ctcgggctgccatatcagctgttggaaaagttcctagccaaattctagtcttcgtgttgggctccctcatttcacaaacccatttatctaagttcctctt 389  Q
    |||| || ||||| ||||| ||||||||||| ||||||||||| ||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||    
T  23283639 ctcgtgcagccatctcagccgttggaaaagtccctagccaaatcctagtctttttgttgggttccctcatttcacaaacccatttatctaagttcctctt 23283738  T
Q  390 ccttacacctctatacaccgggtggcgagtttccttgaatatcttcctc 438  Q
    ||| ||||| |||||||||||||||||||| ||||| ||  ||||||||    
T  23283739 cctcacacccctatacaccgggtggcgagtctccttaaacttcttcctc 23283787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 139 - 443
Target Start/End: Original strand, 23586957 - 23587261
Alignment:
Q  139 ttgtctggtctaaaagcttcggcggcttttgtagctgccttttgaatatctttta-ttgaggaagttgctggaataggaagccgccacaccgagtctgca 237  Q
    ||||||||||| ||||| |||||||| | |||||| |||||||| ||||| |||  ||||| | ||||| ||  | || ||||||||| | |||||||||    
T  23586957 ttgtctggtctgaaagcctcggcggcctctgtagcagccttttgtatatcctttgcttgagta-gttgcaggtttggggagccgccacgctgagtctgca 23587055  T
Q  238 aaattgagacaggcgtagcgacccctcaatgccatcgcagcaacatcatgggctcgggctgccatatcagctgttggaaaagttcctagccaaattctag 337  Q
    || |||||||| |||||||| |||||||||||||| ||||||||||| ||||| ||||||||||| || || ||||||||||| |||||||||||  |||    
T  23587056 aagttgagacaagcgtagcggcccctcaatgccattgcagcaacatcgtgggcacgggctgccatctcggcagttggaaaagtccctagccaaatcttag 23587155  T
Q  338 tcttcgtgttgggctccctcatttcacaaacccatttatctaagttcctcttccttacacctctatacaccgggtggcgagtttccttgaatatcttcct 437  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||| || ||||||||||||||||||||  |||||||    
T  23587156 tcttcttgttaggctccctcatttcacaaacccatttatctaagttcctcttcctcactcctctatagactgggtggcgagtttccttgaacttcttcct 23587255  T
Q  438 ctctgc 443  Q
    | ||||    
T  23587256 ccctgc 23587261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 211 - 443
Target Start/End: Original strand, 23391342 - 23391574
Alignment:
Q  211 ataggaagccgccacaccgagtctgcaaaattgagacaggcgtagcgacccctcaatgccatcgcagcaacatcatgggctcgggctgccatatcagctg 310  Q
    ||||| ||||||||| | ||||||||||| ||||||||||||||||| |||||||||||||| || ||||||||||| |||||||||||||| || || |    
T  23391342 atagggagccgccacgcggagtctgcaaagttgagacaggcgtagcggcccctcaatgccattgcggcaacatcatgtgctcgggctgccatctccgcag 23391441  T
Q  311 ttggaaaagttcctagccaaattctagtcttcgtgttgggctccctcatttcacaaacccatttatctaagttcctcttccttacacctctatacaccgg 410  Q
    |||||||||| |||||||||||| |||||||| | || || |||||||||||||| ||||||||||||||||| || ||||| ||||| ||||| |||||    
T  23391442 ttggaaaagtgcctagccaaattttagtcttcttatttggttccctcatttcacacacccatttatctaagtttcttttcctcacacccctatataccgg 23391541  T
Q  411 gtggcgagtttccttgaatatcttcctctctgc 443  Q
    ||||||||| ||||||||  |||||||| ||||    
T  23391542 gtggcgagtctccttgaacttcttcctccctgc 23391574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 229 - 443
Target Start/End: Original strand, 23583164 - 23583377
Alignment:
Q  229 gagtctgcaaaattgagacaggcgtagcgacccctcaatgccatcgcagcaacatcatgggctcgggctgccatatcagctgttggaaaagttcctagcc 328  Q
    ||||||||||| ||||||||||||||||| ||| |||||||||| ||||||||||| ||||| |||| |||||| || || ||||||||||| |||||||    
T  23583164 gagtctgcaaagttgagacaggcgtagcggccc-tcaatgccattgcagcaacatcgtgggcacgggttgccatctccgcagttggaaaagtccctagcc 23583262  T
Q  329 aaattctagtcttcgtgttgggctccctcatttcacaaacccatttatctaagttcctcttccttacacctctatacaccgggtggcgagtttccttgaa 428  Q
    ||||  |||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||    
T  23583263 aaatcttagtcttcttgttaggcttcctcatttcacaaacccatttatctaagttcctcttccttacacccctatagaccgggtggcgagtctccttgaa 23583362  T
Q  429 tatcttcctctctgc 443  Q
      |||||||| ||||    
T  23583363 cttcttcctccctgc 23583377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 95 - 444
Target Start/End: Original strand, 23289757 - 23290106
Alignment:
Q  95 cgacgacagctacaacagtctcaatgttggtaatcattatagtattgtctggtctaaaagcttcggcggcttttgtagctgccttttgaatatcttttat 194  Q
    |||| ||||| ||||| || ||||||   ||| |||||| ||| ||||||||||| ||||| || ||||||| |  ||||||| ||||||| ||||||      
T  23289757 cgacaacagccacaaccgtgtcaatgccagtagtcattaaagtcttgtctggtctgaaagcctcagcggcttctccagctgccctttgaatgtcttttgc 23289856  T
Q  195 tgaggaagttgctggaataggaagccgccacaccgagtctgcaaaattgagacaggcgtagcgacccctcaatgccatcgcagcaacatcatgggctcgg 294  Q
    |   |  |  || ||||||||||||  |||| ||||||||||||| ||||||||||||||||| ||||||||||| || || ||||| || || || |||    
T  23289857 ttcagcggaggcaggaataggaagcttccacgccgagtctgcaaagttgagacaggcgtagcggcccctcaatgcaattgctgcaacgtcgtgtgcacgg 23289956  T
Q  295 gctgccatatcagctgttggaaaagttcctagccaaattctagtcttcgtgttgggctccctcatttcacaaacccatttatctaagttcctcttcctta 394  Q
    || ||||| || ||||||| |||||| ||||||||||| ||||||||| | || || |||||||||||||| |||||||||||||||||||||||||| |    
T  23289957 gcagccatctcggctgttgcaaaagtccctagccaaatcctagtcttcttatttggttccctcatttcacacacccatttatctaagttcctcttcctca 23290056  T
Q  395 cacctctatacaccgggtggcgagtttccttgaatatcttcctctctgct 444  Q
    ||||||||||||||||||||||||| ||||| ||  |||||||| |||||    
T  23290057 cacctctatacaccgggtggcgagtctccttaaacttcttcctccctgct 23290106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 139 - 443
Target Start/End: Original strand, 23633991 - 23634295
Alignment:
Q  139 ttgtctggtctaaaagcttcggcggcttttgtagctgccttttgaatatcttttattgaggaagttgctggaataggaagccgccacaccgagtctgcaa 238  Q
    ||||||||||| ||||| ||||| |||| || ||| | |||||| |||||| || |    | ||| || ||||||||||||||| |  | ||||| ||||    
T  23633991 ttgtctggtctgaaagcctcggcagcttctgcagccgtcttttgtatatctcttgtctctgtagtggcaggaataggaagccgcgaggcagagtcagcaa 23634090  T
Q  239 aattgagacaggcgtagcgacccctcaatgccatcgcagcaacatcatgggctcgggctgccatatcagctgttggaaaagttcctagccaaattctagt 338  Q
    |||| |||||||||| |||||| || |||||||  || || |||||||| ||||| |||||||| || || ||||||||||| |||||||||||  ||||    
T  23634091 aattaagacaggcgttgcgacctcttaatgccaatgccgcgacatcatgtgctcgtgctgccatctcggccgttggaaaagtccctagccaaatcttagt 23634190  T
Q  339 cttcgtgttgggctccctcatttcacaaacccatttatctaagttcctcttccttacacctctatacaccgggtggcgagtttccttgaatatcttcctc 438  Q
    |||| |||| ||||||||||||||||| ||||||||||||||||||||| |||| ||||| || |||||||||||||| || ||||||||  ||||||||    
T  23634191 cttcttgttaggctccctcatttcacacacccatttatctaagttcctcctcctcacacccctgtacaccgggtggcgtgtctccttgaacttcttcctc 23634290  T
Q  439 tctgc 443  Q
     ||||    
T  23634291 cctgc 23634295  T

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Target: chr6; HSP #11
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 227 - 438
Target Start/End: Original strand, 23506899 - 23507110
Alignment:
Q  227 ccgagtctgcaaaattgagacaggcgtagcgacccctcaatgccatcgcagcaacatcatgggctcgggctgccatatcagctgttggaaaagttcctag 326  Q
    ||||||||||||| ||||||||||||| || |||  |||| ||||  || |||||||||||||| || |||||||| || ||||||||||||||||||||    
T  23506899 ccgagtctgcaaagttgagacaggcgtcgccacctttcaacgccagtgccgcaacatcatgggcccgagctgccatctcggctgttggaaaagttcctag 23506998  T
Q  327 ccaaattctagtcttcgtgttgggctccctcatttcacaaacccatttatctaagttcctcttccttacacctctatacaccgggtggcgagtttccttg 426  Q
    ||||||  | |||||  |||| ||||  || |||||||| ||||||||||||| ||||||  |||| ||||| |||||||||||||||||||||||||||    
T  23506999 ccaaatcttggtctttttgttaggctgtcttatttcacacacccatttatctaggttcctactcctcacacccctatacaccgggtggcgagtttccttg 23507098  T
Q  427 aatatcttcctc 438  Q
    ||| ||||||||    
T  23507099 aatttcttcctc 23507110  T

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Target: chr6; HSP #12
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 208 - 428
Target Start/End: Original strand, 23594092 - 23594312
Alignment:
Q  208 ggaataggaagccgccacaccgagtctgcaaaattgagacaggcgtagcgacccctcaatgccatcgcagcaacatcatgggctcgggctgccatatcag 307  Q
    |||||| | ||||||||  | ||||||||||| |||||||| ||||| | ||| ||||||||||  |  || |||||||||||||| ||| |||| ||||    
T  23594092 ggaataaggagccgccatgcagagtctgcaaagttgagacaagcgtaacaacctctcaatgccaatgtcgcgacatcatgggctcgtgcttccatctcag 23594191  T
Q  308 ctgttggaaaagttcctagccaaattctagtcttcgtgttgggctccctcatttcacaaacccatttatctaagttcctcttccttacacctctatacac 407  Q
    |  ||||||||||||||||||| ||  ||||| || |||| ||||||||||||||||| ||||||||| |||| |||||  |||| ||||| ||||| |     
T  23594192 ccattggaaaagttcctagccatatcttagtcatcttgttaggctccctcatttcacacacccatttacctaaattcctactcctcacacccctatagat 23594291  T
Q  408 cgggtggcgagtttccttgaa 428  Q
    |||||||| |||  |||||||    
T  23594292 cgggtggcaagtcaccttgaa 23594312  T

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Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 208 - 271
Target Start/End: Original strand, 23506718 - 23506781
Alignment:
Q  208 ggaataggaagccgccacaccgagtctgcaaaattgagacaggcgtagcgacccctcaatgcca 271  Q
    ||||||||||||||| |  ||||||||||||| ||||||||||||| |||||| || |||||||    
T  23506718 ggaataggaagccgcgaggccgagtctgcaaagttgagacaggcgttgcgacctcttaatgcca 23506781  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 277 - 335
Target Start/End: Original strand, 3996385 - 3996443
Alignment:
Q  277 gcaacatcatgggctcgggctgccatatcagctgttggaaaagttcctagccaaattct 335  Q
    ||||| ||||||||||| |||||||| || | ||||||| |||| ||||||||||||||    
T  3996385 gcaacgtcatgggctcgagctgccatctcgggtgttggataagtgcctagccaaattct 3996443  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 335
Target Start/End: Complemental strand, 41521800 - 41521739
Alignment:
Q  274 gcagcaacatcatgggctcgggctgccatatcagctgttggaaaagttcctagccaaattct 335  Q
    ||||| |||||||| ||||  || ||||||||||  |||||||||||||| |||||||||||    
T  41521800 gcagccacatcatgagctctagcagccatatcaggagttggaaaagttccgagccaaattct 41521739  T

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