View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3064_high_10 (Length: 483)
Name: NF3064_high_10
Description: NF3064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3064_high_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 5 - 429
Target Start/End: Original strand, 30018836 - 30019254
Alignment:
| Q |
5 |
gagagaaatgaatcagctagaggaggaagcaacaaaaatgaagttgattcttcatctcttgtgacactcacattagatgaatatcatgagctaagtaaga |
104 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30018836 |
gagagaagtgaatcagctagaggaggaagcaacaaaaatgaagttgattcttcatctcttgtgacactcacattagatgaatatcatgagctaagtaaga |
30018935 |
T |
|
| Q |
105 |
gaactcaaaaggctgaggaacaagctaatctaagaattgcagctgcaaattcacagattgagatggcaaaggaatctgaattgagaagcttggagaagtt |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30018936 |
gaactcaaaaggctgaggaacaagctaatctaagaattgcagctgcaaattcacagattgagatggcaaaggaatctgaattgagaagcttggagaagtt |
30019035 |
T |
|
| Q |
205 |
ggaagaactgaacgaagagctgtgtgtaagaaaggaatcacttaagattgcaaatgagaatgctgagaaagctgcagaaggaaaatcagctgtagaacaa |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30019036 |
ggaagaactgaacgaagagctgtgtgtaagaagggaatcacttaagattgcaaatgagaatgctgagaaagctgcagaaggaaaatcagctgtagaacaa |
30019135 |
T |
|
| Q |
305 |
gagttgaggacatggagagctgaacaagaacaaagaaaagctaatgaggttaatactgctgcagctgctgcaactgtgaatgtaaatgattcaccaaact |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| | |||| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30019136 |
gagttgaggacatggagagctgaacaagaacaaagaaaagctaatg------ctgctgcagctgctgctgcaactgtgaatgtaaatgattcaccaaact |
30019229 |
T |
|
| Q |
405 |
cctcaaagggaaaatctcctgtaga |
429 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
30019230 |
cctcaaagggaaaatctcctgtaga |
30019254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 204
Target Start/End: Complemental strand, 43697902 - 43697873
Alignment:
| Q |
175 |
ggaatctgaattgagaagcttggagaagtt |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
43697902 |
ggaatctgaattgagaagcttggagaagtt |
43697873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University